Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10243919	0.81[EUR][1000 genomes]
rs10248125	0.80[CEU][hapmap];0.82[CHB][hapmap];0.80[MKK][hapmap]
rs10248911	0.96[ASN][1000 genomes]
rs10808167	0.92[CEU][hapmap];0.87[TSI][hapmap]
rs1118936	0.92[CEU][hapmap];0.87[TSI][hapmap]
rs1207870	0.91[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1207871	0.96[ASN][1000 genomes]
rs1207872	0.96[ASN][1000 genomes]
rs1207874	0.96[ASN][1000 genomes]
rs1207875	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1207881	0.86[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1207882	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1207895	0.86[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1209401	0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1360302	0.83[TSI][hapmap]
rs1360303	0.83[EUR][1000 genomes]
rs1888238	0.87[TSI][hapmap]
rs1888239	0.83[TSI][hapmap]
rs2210115	0.86[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2774058	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4730480	0.92[CEU][hapmap];0.95[GIH][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67890238	0.96[ASN][1000 genomes]
rs944279	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6951046	CCL24	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78363600-78380400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:78368000-78375600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:78368600-78374400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr7:78371000-78375400	Weak transcription	Fetal Brain Male	brain
5	chr7:78372000-78373000	Enhancers	HMEC	breast
6	chr7:78372000-78373200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:78372000-78373200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:78372200-78373200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:78372400-78375200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:78372400-78375600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:78372400-78376800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:78372400-78391600	Weak transcription	Pancreas	Pancrea
13	chr7:78372400-78395200	Weak transcription	Aorta	Aorta

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