Variant report

Variant	rs10808167
Chromosome Location	chr7:78366575-78366576
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10242163	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10243919	0.85[EUR][1000 genomes]
rs10248125	0.81[CEU][hapmap]
rs10274281	0.85[JPT][hapmap]
rs1118935	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1118936	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1360302	1.00[ASW][hapmap];0.93[GIH][hapmap];0.98[LWK][hapmap];0.86[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1360303	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1859326	0.84[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1888238	0.93[GIH][hapmap];0.82[TSI][hapmap]
rs1888239	0.93[GIH][hapmap];0.82[TSI][hapmap]
rs4730476	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4730480	0.92[CEU][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes]
rs6951046	0.92[CEU][hapmap];0.87[TSI][hapmap]
rs6953482	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6976884	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs757395	0.89[CHB][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78361600-78372000	Weak transcription	Aorta	Aorta
2	chr7:78362800-78372200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:78363600-78380400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:78364200-78372000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:78366200-78366600	Enhancers	Brain Germinal Matrix	brain
6	chr7:78366200-78366800	Enhancers	Brain Anterior Caudate	brain
7	chr7:78366200-78372000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:78366400-78366800	Enhancers	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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