Variant report

Variant	rs1360302
Chromosome Location	chr7:78375066-78375067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1015886	0.89[CEU][hapmap]
rs10227551	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10235632	0.87[EUR][1000 genomes]
rs10237620	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10242163	0.83[AMR][1000 genomes]
rs10242552	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10250784	0.87[EUR][1000 genomes]
rs10252524	0.85[EUR][1000 genomes]
rs10255247	0.95[ASN][1000 genomes]
rs10264296	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10808167	1.00[ASW][hapmap];0.93[GIH][hapmap];0.98[LWK][hapmap];0.86[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1118935	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1118936	1.00[ASW][hapmap];0.93[GIH][hapmap];0.95[LWK][hapmap];0.83[MKK][hapmap];0.82[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11974493	0.96[CEU][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs11980954	0.96[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13244373	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13246802	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1330494	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs13308578	0.96[CEU][hapmap];0.82[TSI][hapmap];0.88[EUR][1000 genomes]
rs1360303	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1888238	0.96[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1888239	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2003119	0.89[EUR][1000 genomes]
rs2214558	0.92[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6951046	0.83[TSI][hapmap]
rs6953482	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6976884	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs757395	0.89[GIH][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1360302	CCL26	cis	cerebellum	SCAN
rs1360302	TST	trans	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78363600-78380400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:78368000-78375600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:78371000-78375400	Weak transcription	Fetal Brain Male	brain
4	chr7:78372400-78375200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr7:78372400-78375600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:78372400-78376800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:78372400-78391600	Weak transcription	Pancreas	Pancrea
8	chr7:78372400-78395200	Weak transcription	Aorta	Aorta
9	chr7:78373800-78378400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:78374000-78375400	Enhancers	Brain Cingulate Gyrus	brain
11	chr7:78374200-78377400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr7:78374200-78379200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr7:78374200-78379200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr7:78374400-78376000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:78374400-78377000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:78374400-78377600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr7:78374800-78376800	Weak transcription	Brain Substantia Nigra	brain
18	chr7:78374800-78379800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:78375000-78375800	Weak transcription	Fetal Brain Female	brain
20	chr7:78375000-78376800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:78375000-78379000	Enhancers	HUES64 Cell Line	embryonic stem cell

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