Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10227551	0.83[EUR][1000 genomes]
rs10242552	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs10264296	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs11974493	0.92[CEU][hapmap]
rs11980954	0.83[CEU][hapmap]
rs1207862	0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1207868	0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1207896	0.80[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1207897	0.93[ASN][1000 genomes]
rs1207898	0.85[CHB][hapmap];0.87[JPT][hapmap];0.95[ASN][1000 genomes]
rs1207900	0.93[ASN][1000 genomes]
rs1207901	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12671666	0.93[ASN][1000 genomes]
rs13244373	0.82[EUR][1000 genomes]
rs13246802	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs1330494	0.90[CEU][hapmap]
rs13308578	0.92[CEU][hapmap]
rs1360302	0.89[CEU][hapmap]
rs1888238	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs1888239	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs37851	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs37852	0.93[JPT][hapmap]
rs6953482	0.89[CEU][hapmap]
rs6976884	0.86[CEU][hapmap]
rs7790151	0.81[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs973320	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78402000-78406600	Weak transcription	Brain Substantia Nigra	brain
2	chr7:78402000-78406800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr7:78402000-78407400	Weak transcription	Brain Angular Gyrus	brain
4	chr7:78402000-78413000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:78403200-78403800	Weak transcription	Psoas Muscle	Psoas

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