Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:78405474..78407016-chr7:78415742..78418693,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1015886	0.93[ASN][1000 genomes]
rs1207862	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1207868	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1207870	0.81[EUR][1000 genomes]
rs1207871	0.81[EUR][1000 genomes]
rs1207872	0.81[EUR][1000 genomes]
rs1207874	0.81[EUR][1000 genomes]
rs1207875	0.81[EUR][1000 genomes]
rs1207882	0.80[EUR][1000 genomes]
rs1207895	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1207896	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1207898	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1207900	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1207901	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1209401	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12671666	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2210115	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2774058	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67890238	0.81[EUR][1000 genomes]
rs7790151	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs973320	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv949647	chr7:78406281-78495913	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78402000-78406600	Weak transcription	Brain Substantia Nigra	brain
2	chr7:78402000-78406800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr7:78402000-78407400	Weak transcription	Brain Angular Gyrus	brain
4	chr7:78402000-78413000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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