Variant report

Variant	rs1207868
Chromosome Location	chr7:78401699-78401700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1015886	0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1207862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1207870	0.96[CEU][hapmap];0.82[GIH][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs1207871	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs1207872	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs1207874	0.81[EUR][1000 genomes]
rs1207875	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs1207881	0.96[CEU][hapmap];0.82[GIH][hapmap];0.87[TSI][hapmap]
rs1207882	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs1207895	1.00[CEU][hapmap];0.82[GIH][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs1207896	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1207897	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1207898	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1207900	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1207901	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1209401	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12671666	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2210115	1.00[CEU][hapmap];0.81[GIH][hapmap];0.91[MKK][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes]
rs2774058	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs37851	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs37852	0.93[JPT][hapmap]
rs67890238	0.81[EUR][1000 genomes]
rs7790151	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs973320	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78400600-78403000	Weak transcription	Psoas Muscle	Psoas
2	chr7:78400800-78401800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:78400800-78402000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:78400800-78402000	Enhancers	Brain Cingulate Gyrus	brain
5	chr7:78401000-78401800	Enhancers	Brain Germinal Matrix	brain
6	chr7:78401000-78402000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr7:78401000-78402000	Enhancers	Brain Angular Gyrus	brain
8	chr7:78401000-78402600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:78401000-78402600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr7:78401000-78402600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:78401000-78402600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr7:78401000-78402600	Enhancers	Fetal Brain Male	brain
13	chr7:78401200-78401800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr7:78401200-78401800	Weak transcription	Brain Substantia Nigra	brain
15	chr7:78401200-78402600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr7:78401200-78402600	Weak transcription	Fetal Brain Female	brain
17	chr7:78401400-78402000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr7:78401400-78402000	Enhancers	H9 Cell Line	embryonic stem cell
19	chr7:78401600-78401800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr7:78401600-78402000	Enhancers	Brain Inferior Temporal Lobe	brain

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