Variant report

Variant	rs1209401
Chromosome Location	chr7:78393153-78393154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10248125	0.83[CHB][hapmap]
rs10248911	0.97[ASN][1000 genomes]
rs1207862	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1207868	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1207870	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1207871	0.90[CEU][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1207872	0.90[CEU][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1207874	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1207875	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1207881	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1207882	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1207895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1207896	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1207897	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1207898	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1207900	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1207901	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12671666	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1859327	0.89[CHB][hapmap]
rs2210115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2774058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67890238	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6951046	0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7790151	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs944279	0.93[ASN][1000 genomes]
rs973320	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78372400-78395200	Weak transcription	Aorta	Aorta
2	chr7:78381200-78393200	Weak transcription	Fetal Heart	heart
3	chr7:78381200-78393600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:78386200-78397600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:78388400-78395200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr7:78390400-78393600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:78391000-78395400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr7:78391800-78398800	Weak transcription	Pancreas	Pancrea
9	chr7:78392000-78394200	Weak transcription	Brain Substantia Nigra	brain
10	chr7:78392800-78393200	Enhancers	Brain Anterior Caudate	brain

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