Variant report
| Variant | rs1207900 |
|---|---|
| Chromosome Location | chr7:78408316-78408317 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1015886 | 0.93[ASN][1000 genomes] |
| rs1207862 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1207868 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1207870 | 0.81[EUR][1000 genomes] |
| rs1207871 | 0.81[EUR][1000 genomes] |
| rs1207872 | 0.81[EUR][1000 genomes] |
| rs1207874 | 0.81[EUR][1000 genomes] |
| rs1207875 | 0.81[EUR][1000 genomes] |
| rs1207882 | 0.80[EUR][1000 genomes] |
| rs1207895 | 0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1207896 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1207897 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1207898 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1207901 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1209401 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12671666 | 0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2210115 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2774058 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs67890238 | 0.81[EUR][1000 genomes] |
| rs7790151 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs973320 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1022199 | chr7:78054639-78469370 | Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv538986 | chr7:78054639-78469370 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv607657 | chr7:78329795-78483211 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv949647 | chr7:78406281-78495913 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:78402000-78413000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
