Variant report

Variant	rs6976884
Chromosome Location	chr7:78365239-78365240
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:78291912..78294336-chr7:78364604..78366410,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1015886	0.86[CEU][hapmap]
rs10227551	0.88[EUR][1000 genomes]
rs10237620	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10242163	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10242552	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs10264296	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs10274281	0.81[JPT][hapmap];0.81[AFR][1000 genomes]
rs10808167	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1118935	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1118936	0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11974493	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs11980954	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs13244373	0.87[EUR][1000 genomes]
rs13246802	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs1330494	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs13308578	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs1360302	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1859326	0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs1888238	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs1888239	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs2003119	0.82[EUR][1000 genomes]
rs2214558	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs4730476	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6953482	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs757395	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78361600-78372000	Weak transcription	Aorta	Aorta
2	chr7:78362400-78366200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:78362800-78372200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:78363600-78380400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:78363800-78366400	Weak transcription	Brain Angular Gyrus	brain
6	chr7:78364000-78366200	Weak transcription	Brain Anterior Caudate	brain
7	chr7:78364000-78366400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:78364200-78365600	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:78364200-78365800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:78364200-78372000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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