Variant report

Variant	rs10274281
Chromosome Location	chr7:78354753-78354754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:78354533..78356785-chr7:78357118..78359771,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10237271	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs10242163	0.86[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs10252981	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs10255125	0.82[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs10256096	0.85[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes]
rs10267607	0.84[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.90[EUR][1000 genomes]
rs10274288	0.82[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes]
rs10808167	0.85[JPT][hapmap]
rs10953675	0.81[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes]
rs1118936	0.85[JPT][hapmap]
rs11768116	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs13234228	0.81[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes]
rs13237827	0.81[JPT][hapmap]
rs13240156	0.90[JPT][hapmap]
rs13242288	0.84[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes]
rs13246026	0.81[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes]
rs1390824	0.81[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes]
rs1496779	0.82[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes]
rs1496780	0.89[EUR][1000 genomes]
rs17384271	0.82[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes]
rs1859326	0.86[JPT][hapmap]
rs2190662	0.81[JPT][hapmap]
rs6948326	0.85[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes]
rs6953482	0.81[JPT][hapmap]
rs6976884	0.81[JPT][hapmap];0.81[AFR][1000 genomes]
rs757395	0.85[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes]
rs7785088	0.81[JPT][hapmap]
rs9640732	0.82[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78346800-78361400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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