Variant report

Variant	rs10237620
Chromosome Location	chr7:78375972-78375973
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10227551	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10235632	0.87[EUR][1000 genomes]
rs10242163	0.83[AMR][1000 genomes]
rs10242552	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10250784	0.87[EUR][1000 genomes]
rs10252524	0.85[EUR][1000 genomes]
rs10255247	0.95[ASN][1000 genomes]
rs10264296	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1118935	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11974493	0.89[EUR][1000 genomes]
rs11980954	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13244373	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13246802	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1330494	0.88[EUR][1000 genomes]
rs13308578	0.88[EUR][1000 genomes]
rs1360302	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1360303	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1888238	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1888239	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2003119	0.89[EUR][1000 genomes]
rs2214558	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6953482	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6976884	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs757395	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1019355	chr7:78319575-78399845	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607657	chr7:78329795-78483211	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78363600-78380400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:78372400-78376800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:78372400-78391600	Weak transcription	Pancreas	Pancrea
4	chr7:78372400-78395200	Weak transcription	Aorta	Aorta
5	chr7:78373800-78378400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:78374200-78377400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:78374200-78379200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:78374200-78379200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:78374400-78376000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:78374400-78377000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:78374400-78377600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr7:78374800-78376800	Weak transcription	Brain Substantia Nigra	brain
13	chr7:78374800-78379800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:78375000-78376800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:78375000-78379000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr7:78375400-78376000	Enhancers	Brain Hippocampus Middle	brain
17	chr7:78375400-78377000	Weak transcription	Brain Anterior Caudate	brain
18	chr7:78375400-78377200	Enhancers	Fetal Brain Male	brain
19	chr7:78375400-78378400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr7:78375600-78376000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:78375600-78376000	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr7:78375600-78376200	Enhancers	H1 Cell Line	embryonic stem cell
23	chr7:78375600-78377200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr7:78375800-78376000	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr7:78375800-78376200	Enhancers	Fetal Brain Female	brain
26	chr7:78375800-78381000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links