The 2.0 version of rSNPBase

Variant report

Variant rs696621
Chromosome Location chr1:95314552-95314553
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95286600-95319800 Weak transcription Lung lung
2 chr1:95287000-95319800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr1:95287800-95320200 Weak transcription Rectal Smooth Muscle rectum
4 chr1:95289200-95314800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr1:95289200-95318600 Weak transcription HSMMtube muscle
6 chr1:95293600-95319800 Weak transcription Esophagus oesophagus
7 chr1:95293600-95320000 Weak transcription Duodenum Smooth Muscle Duodenum
8 chr1:95294000-95320400 Weak transcription Small Intestine intestine
9 chr1:95301800-95328600 Strong transcription Fetal Intestine Large intestine
10 chr1:95303800-95316800 Weak transcription Left Ventricle heart
11 chr1:95304400-95314600 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr1:95305400-95318200 Strong transcription Rectal Mucosa Donor 29 rectum
13 chr1:95305600-95315800 Weak transcription Brain Anterior Caudate brain
14 chr1:95306200-95318200 Strong transcription Sigmoid Colon Sigmoid Colon
15 chr1:95306200-95318800 Strong transcription Rectal Mucosa Donor 31 rectum
16 chr1:95306600-95320200 Weak transcription Aorta Aorta
17 chr1:95307400-95319800 Weak transcription iPS-15b Cell Line embryonic stem cell
18 chr1:95308400-95319800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr1:95308400-95320200 Weak transcription HepG2 liver
20 chr1:95308400-95320400 Weak transcription Stomach Mucosa stomach
21 chr1:95309200-95316200 Enhancers Fetal Thymus thymus
22 chr1:95309400-95319400 Strong transcription Fetal Intestine Small intestine
23 chr1:95309800-95319400 Strong transcription Duodenum Mucosa Duodenum
24 chr1:95310200-95314800 Weak transcription Fetal Adrenal Gland Adrenal Gland
25 chr1:95310400-95317400 Strong transcription Breast Myoepithelial Primary Cells Breast
26 chr1:95311600-95315200 Strong transcription Pancreas Pancrea
27 chr1:95312000-95315200 Strong transcription Gastric stomach
28 chr1:95312200-95314800 Enhancers Placenta Amnion Placenta Amnion
29 chr1:95312400-95315600 Strong transcription Fetal Stomach stomach
30 chr1:95312400-95316000 Weak transcription Fetal Heart heart
31 chr1:95312400-95318200 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr1:95312600-95314600 Weak transcription Thymus Thymus
33 chr1:95312800-95316600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr1:95312800-95319600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr1:95312800-95320000 Weak transcription Fetal Muscle Trunk muscle
36 chr1:95312800-95328200 Weak transcription Fetal Lung lung
37 chr1:95313000-95317000 Weak transcription Right Ventricle heart
38 chr1:95313000-95319600 Weak transcription Fetal Muscle Leg muscle
39 chr1:95313000-95320000 Weak transcription Colonic Mucosa Colon
40 chr1:95313200-95320200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
41 chr1:95313800-95314800 Bivalent Enhancer Placenta Placenta
42 chr1:95314000-95320000 Weak transcription Stomach Smooth Muscle stomach
43 chr1:95314400-95319800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
44 chr1:95314400-95319800 Weak transcription Spleen Spleen

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Last update: Aug 31, 2015