Variant report

Variant	rs17112279
Chromosome Location	chr1:95238947-95238948
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95236740..95239780-chr1:95240138..95243352,4	K562	blood:
2	chr1:95236284..95239161-chr1:95266058..95267652,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12064943	1.00[EUR][1000 genomes]
rs12065028	1.00[EUR][1000 genomes]
rs1747656	1.00[EUR][1000 genomes]
rs1747658	1.00[EUR][1000 genomes]
rs1772902	1.00[EUR][1000 genomes]
rs1778210	1.00[EUR][1000 genomes]
rs4847315	1.00[EUR][1000 genomes]
rs696621	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95221600-95239000	Weak transcription	Fetal Intestine Large	intestine
2	chr1:95223800-95241600	Weak transcription	Aorta	Aorta
3	chr1:95234800-95239400	Weak transcription	Fetal Intestine Small	intestine
4	chr1:95235800-95239000	Weak transcription	NHEK	skin
5	chr1:95237000-95239800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:95237000-95242000	Enhancers	Pancreas	Pancrea
7	chr1:95237200-95239800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr1:95237200-95240400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:95237200-95240800	Enhancers	Placenta Amnion	Placenta Amnion
10	chr1:95237400-95240000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr1:95237600-95239000	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr1:95237600-95239600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:95237800-95240000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr1:95238000-95239000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:95238000-95239200	Enhancers	Primary hematopoietic stem cells	blood
16	chr1:95238000-95239400	Enhancers	Primary B cells from peripheral blood	blood
17	chr1:95238000-95239800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr1:95238000-95240000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:95238000-95240000	Enhancers	Placenta	Placenta
20	chr1:95238000-95240600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr1:95238000-95241000	Enhancers	Stomach Mucosa	stomach
22	chr1:95238200-95239000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr1:95238200-95239600	Enhancers	Primary B cells from cord blood	blood
24	chr1:95238400-95240600	Enhancers	NHLF	lung
25	chr1:95238400-95240800	Enhancers	Lung	lung
26	chr1:95238600-95239000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr1:95238600-95240000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr1:95238600-95240200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr1:95238800-95239400	Enhancers	H9 Cell Line	embryonic stem cell
30	chr1:95238800-95239400	Enhancers	GM12878-XiMat	blood
31	chr1:95238800-95239800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr1:95238800-95239800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr1:95238800-95240000	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr1:95238800-95240000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr1:95238800-95240000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr1:95238800-95240000	Enhancers	NH-A	brain
37	chr1:95238800-95240600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr1:95238800-95240800	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links