Variant report

Variant	rs4847315
Chromosome Location	chr1:95069113-95069114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95067748..95070486-chr1:95070993..95073979,4	K562	blood:
2	chr1:95068045..95070486-chr1:95071108..95072675,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10399782	1.00[EUR][1000 genomes]
rs1146475	1.00[EUR][1000 genomes]
rs1146478	1.00[EUR][1000 genomes]
rs1146479	1.00[EUR][1000 genomes]
rs1146506	1.00[EUR][1000 genomes]
rs1146516	1.00[EUR][1000 genomes]
rs12064943	1.00[EUR][1000 genomes]
rs12065028	1.00[EUR][1000 genomes]
rs1303136	1.00[EUR][1000 genomes]
rs1343483	1.00[EUR][1000 genomes]
rs1617719	1.00[EUR][1000 genomes]
rs1687938	1.00[EUR][1000 genomes]
rs1687939	1.00[EUR][1000 genomes]
rs1687969	1.00[EUR][1000 genomes]
rs17112279	1.00[EUR][1000 genomes]
rs1747656	1.00[EUR][1000 genomes]
rs1747658	1.00[EUR][1000 genomes]
rs1749540	1.00[EUR][1000 genomes]
rs1765633	1.00[EUR][1000 genomes]
rs1765634	1.00[EUR][1000 genomes]
rs1765653	1.00[EUR][1000 genomes]
rs1772902	1.00[EUR][1000 genomes]
rs1778210	1.00[EUR][1000 genomes]
rs2798944	1.00[EUR][1000 genomes]
rs2971948	1.00[EUR][1000 genomes]
rs479627	1.00[EUR][1000 genomes]
rs484420	1.00[EUR][1000 genomes]
rs512648	1.00[EUR][1000 genomes]
rs513976	1.00[EUR][1000 genomes]
rs529642	1.00[EUR][1000 genomes]
rs598962	1.00[EUR][1000 genomes]
rs610088	1.00[EUR][1000 genomes]
rs630382	1.00[EUR][1000 genomes]
rs6660037	1.00[EUR][1000 genomes]
rs698945	1.00[EUR][1000 genomes]
rs768967	1.00[EUR][1000 genomes]
rs860909	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870696	chr1:95005220-95081587	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv871391	chr1:95005220-95083836	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv871279	chr1:95028981-95083836	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1804937	chr1:95051930-95081587	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95059400-95074200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:95061400-95076800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:95061600-95071600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:95062000-95072200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:95062400-95070800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:95064000-95069600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:95064400-95069200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:95065200-95081000	Enhancers	Stomach Mucosa	stomach
9	chr1:95065400-95081400	Enhancers	Fetal Intestine Small	intestine
10	chr1:95065600-95087200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr1:95066000-95070000	Enhancers	Fetal Intestine Large	intestine
12	chr1:95066400-95069600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr1:95066400-95070800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:95066400-95071400	Weak transcription	Pancreas	Pancrea
15	chr1:95066600-95071600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr1:95067400-95069200	Enhancers	Primary hematopoietic stem cells	blood
17	chr1:95067400-95069200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr1:95067600-95069200	Flanking Active TSS	Dnd41	blood
19	chr1:95067600-95069600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:95067600-95072000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:95068000-95069200	Enhancers	NH-A	brain
22	chr1:95068000-95071600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr1:95068000-95078200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr1:95068200-95069200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
25	chr1:95068200-95069200	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr1:95068200-95069200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr1:95068200-95069400	Weak transcription	Small Intestine	intestine
28	chr1:95068200-95069800	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr1:95068200-95070800	Weak transcription	Colonic Mucosa	Colon
30	chr1:95068200-95071400	Weak transcription	NHDF-Ad	bronchial
31	chr1:95068200-95073400	Weak transcription	Gastric	stomach
32	chr1:95068200-95074000	Enhancers	Duodenum Mucosa	Duodenum
33	chr1:95068400-95069200	Enhancers	Primary B cells from cord blood	blood
34	chr1:95068400-95069800	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr1:95068600-95069400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr1:95068600-95070000	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr1:95068800-95069200	Enhancers	NHLF	lung
38	chr1:95069000-95071600	Weak transcription	HepG2	liver
39	chr1:95069000-95072000	Weak transcription	HMEC	breast

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