The 2.0 version of rSNPBase

Variant report

Variant rs512648
Chromosome Location chr1:94905017-94905018
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:36 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94885200-94907200 Weak transcription Primary T cells fromperipheralblood blood
2 chr1:94885200-94915000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:94888200-94905400 Weak transcription Right Atrium heart
4 chr1:94888400-94914600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
5 chr1:94889200-94914200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
6 chr1:94894600-94914800 Weak transcription Skeletal Muscle Female skeletal muscle
7 chr1:94895600-94905400 Weak transcription Gastric stomach
8 chr1:94895600-94905400 Weak transcription Left Ventricle heart
9 chr1:94895800-94905400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr1:94899200-94914800 Weak transcription HSMM muscle
11 chr1:94901800-94911200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
12 chr1:94903000-94907800 Weak transcription Primary B cells from cord blood blood
13 chr1:94903200-94905400 Weak transcription Breast Myoepithelial Primary Cells Breast
14 chr1:94903200-94905800 Weak transcription Primary hematopoietic stem cells short term culture blood
15 chr1:94903200-94908200 Weak transcription Fetal Kidney kidney
16 chr1:94903600-94905400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
17 chr1:94903600-94906000 Weak transcription Dnd41 blood
18 chr1:94903800-94905200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr1:94903800-94905600 Enhancers Sigmoid Colon Sigmoid Colon
20 chr1:94903800-94907400 Enhancers HepG2 liver
21 chr1:94904000-94907200 Enhancers Liver Liver
22 chr1:94904200-94905600 Enhancers Fetal Thymus thymus
23 chr1:94904400-94907000 Weak transcription Primary T cells from cord blood blood
24 chr1:94904600-94905400 Weak transcription Psoas Muscle Psoas
25 chr1:94904600-94905600 Enhancers Rectal Mucosa Donor 31 rectum
26 chr1:94904600-94906000 Weak transcription Thymus Thymus
27 chr1:94904600-94910400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
28 chr1:94904600-94910600 Weak transcription Rectal Mucosa Donor 29 rectum
29 chr1:94904600-94914800 Weak transcription Muscle Satellite Cultured Cells --
30 chr1:94904800-94906000 Weak transcription Colon Smooth Muscle Colon
31 chr1:94904800-94908200 Weak transcription A549 lung
32 chr1:94904800-94909000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr1:94905000-94905200 Enhancers Colonic Mucosa Colon
34 chr1:94905000-94905600 ZNF genes & repeats Fetal Intestine Small intestine
35 chr1:94905000-94905600 Enhancers Lung lung
36 chr1:94905000-94906200 Enhancers Pancreas Pancrea

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Last update: Aug 31, 2015