Variant report

Variant	rs1687960
Chromosome Location	chr1:94812816-94812817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94811617..94814291-chr1:94815191..94817382,2	MCF-7	breast:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10399782	1.00[EUR][1000 genomes]
rs10782981	1.00[EUR][1000 genomes]
rs10874845	1.00[EUR][1000 genomes]
rs1146506	1.00[EUR][1000 genomes]
rs1146516	1.00[EUR][1000 genomes]
rs11801203	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11801251	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11802896	0.83[YRI][hapmap]
rs11805161	1.00[EUR][1000 genomes]
rs11810728	0.83[AFR][1000 genomes]
rs12069536	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1303136	1.00[EUR][1000 genomes]
rs1318396	1.00[EUR][1000 genomes]
rs1330856	1.00[EUR][1000 genomes]
rs1330858	1.00[EUR][1000 genomes]
rs1330859	1.00[EUR][1000 genomes]
rs1330860	1.00[EUR][1000 genomes]
rs1337856	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1337857	1.00[EUR][1000 genomes]
rs1361124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1411697	1.00[EUR][1000 genomes]
rs1411703	1.00[EUR][1000 genomes]
rs1571645	1.00[EUR][1000 genomes]
rs1577920	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1616972	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1617363	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1617719	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1687921	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687922	1.00[EUR][1000 genomes]
rs1687923	1.00[EUR][1000 genomes]
rs1687925	1.00[EUR][1000 genomes]
rs1687926	1.00[EUR][1000 genomes]
rs1687929	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1687934	1.00[EUR][1000 genomes]
rs1687938	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1687939	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1687942	1.00[EUR][1000 genomes]
rs1687945	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1687953	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1687955	1.00[EUR][1000 genomes]
rs1687958	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687959	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1687967	1.00[EUR][1000 genomes]
rs1687969	1.00[EUR][1000 genomes]
rs17111347	1.00[EUR][1000 genomes]
rs1749540	1.00[EUR][1000 genomes]
rs1756247	1.00[EUR][1000 genomes]
rs1756256	1.00[EUR][1000 genomes]
rs1756258	1.00[EUR][1000 genomes]
rs1756263	1.00[EUR][1000 genomes]
rs1756264	1.00[EUR][1000 genomes]
rs1756265	0.83[YRI][hapmap]
rs1765616	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1765624	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1765625	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1765631	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1765633	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1765634	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1765637	0.81[AFR][1000 genomes]
rs1765638	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1765639	1.00[EUR][1000 genomes]
rs1765642	0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1765653	1.00[EUR][1000 genomes]
rs2021993	1.00[EUR][1000 genomes]
rs2094824	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2391471	1.00[EUR][1000 genomes]
rs2483792	1.00[EUR][1000 genomes]
rs2774921	1.00[EUR][1000 genomes]
rs2798944	1.00[EUR][1000 genomes]
rs28494821	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2893296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2971948	1.00[EUR][1000 genomes]
rs479627	1.00[EUR][1000 genomes]
rs484420	1.00[EUR][1000 genomes]
rs4847297	1.00[EUR][1000 genomes]
rs512648	1.00[EUR][1000 genomes]
rs513976	1.00[EUR][1000 genomes]
rs529642	1.00[EUR][1000 genomes]
rs59778098	1.00[EUR][1000 genomes]
rs598962	1.00[EUR][1000 genomes]
rs610088	1.00[EUR][1000 genomes]
rs630382	1.00[EUR][1000 genomes]
rs6660037	1.00[EUR][1000 genomes]
rs6684237	1.00[EUR][1000 genomes]
rs698945	1.00[EUR][1000 genomes]
rs7417304	1.00[EUR][1000 genomes]
rs7548077	1.00[EUR][1000 genomes]
rs768967	1.00[EUR][1000 genomes]
rs860909	1.00[EUR][1000 genomes]
rs9432270	1.00[EUR][1000 genomes]
rs9432441	1.00[EUR][1000 genomes]
rs9432688	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94806400-94814600	Weak transcription	Thymus	Thymus
2	chr1:94808200-94814400	Weak transcription	Fetal Thymus	thymus
3	chr1:94811000-94816800	Weak transcription	Placenta	Placenta
4	chr1:94812400-94813200	Enhancers	HepG2	liver
5	chr1:94812600-94813000	Enhancers	Psoas Muscle	Psoas

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