The 2.0 version of rSNPBase

Variant report

Variant rs1749540
Chromosome Location chr1:94895388-94895389
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94885200-94907200 Weak transcription Primary T cells fromperipheralblood blood
2 chr1:94885200-94915000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:94888000-94895400 Weak transcription Lung lung
4 chr1:94888000-94902200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr1:94888200-94905400 Weak transcription Right Atrium heart
6 chr1:94888400-94914600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
7 chr1:94889000-94899200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr1:94889200-94914200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr1:94889600-94896000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
10 chr1:94891000-94895600 Enhancers Stomach Mucosa stomach
11 chr1:94891400-94899200 Weak transcription Primary T helper cells fromperipheralblood blood
12 chr1:94891800-94901400 Weak transcription Dnd41 blood
13 chr1:94892000-94896200 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr1:94892000-94896600 Weak transcription Pancreatic Islets Pancreatic Islet
15 chr1:94892000-94901400 Weak transcription Primary T cells from cord blood blood
16 chr1:94892000-94905000 Weak transcription HMEC breast
17 chr1:94892200-94896400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
18 chr1:94892400-94897200 Enhancers Liver Liver
19 chr1:94892400-94897400 Enhancers HepG2 liver
20 chr1:94892800-94900000 Weak transcription Brain Substantia Nigra brain
21 chr1:94892800-94901400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
22 chr1:94893000-94902400 Weak transcription Breast Myoepithelial Primary Cells Breast
23 chr1:94893400-94899200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
24 chr1:94893400-94903000 Weak transcription A549 lung
25 chr1:94894000-94895400 Enhancers Rectal Mucosa Donor 31 rectum
26 chr1:94894000-94896200 Enhancers Pancreas Pancrea
27 chr1:94894200-94895600 Enhancers Right Ventricle heart
28 chr1:94894200-94896200 ZNF genes & repeats Fetal Intestine Small intestine
29 chr1:94894200-94903200 Weak transcription Osteobl bone
30 chr1:94894600-94895600 Enhancers Gastric stomach
31 chr1:94894600-94896200 Genic enhancers Fetal Thymus thymus
32 chr1:94894600-94914800 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr1:94894800-94895400 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
34 chr1:94894800-94895600 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
35 chr1:94894800-94895600 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
36 chr1:94894800-94895600 ZNF genes & repeats Duodenum Mucosa Duodenum
37 chr1:94894800-94895600 Enhancers Left Ventricle heart
38 chr1:94894800-94895600 Genic enhancers Thymus Thymus
39 chr1:94895000-94895400 Enhancers Rectal Mucosa Donor 29 rectum
40 chr1:94895000-94895600 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr1:94895000-94895600 Active TSS Colonic Mucosa Colon
42 chr1:94895200-94895600 Enhancers Psoas Muscle Psoas
43 chr1:94895200-94895600 Enhancers Sigmoid Colon Sigmoid Colon
44 chr1:94895200-94899200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015