The 2.0 version of rSNPBase

Variant report

Variant rs484420
Chromosome Location chr1:94899480-94899481
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94885200-94907200 Weak transcription Primary T cells fromperipheralblood blood
2 chr1:94885200-94915000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:94888000-94902200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr1:94888200-94905400 Weak transcription Right Atrium heart
5 chr1:94888400-94914600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
6 chr1:94889200-94914200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr1:94891800-94901400 Weak transcription Dnd41 blood
8 chr1:94892000-94901400 Weak transcription Primary T cells from cord blood blood
9 chr1:94892000-94905000 Weak transcription HMEC breast
10 chr1:94892800-94900000 Weak transcription Brain Substantia Nigra brain
11 chr1:94892800-94901400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
12 chr1:94893000-94902400 Weak transcription Breast Myoepithelial Primary Cells Breast
13 chr1:94893400-94903000 Weak transcription A549 lung
14 chr1:94894200-94903200 Weak transcription Osteobl bone
15 chr1:94894600-94914800 Weak transcription Skeletal Muscle Female skeletal muscle
16 chr1:94895400-94902400 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr1:94895400-94904200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr1:94895600-94902200 Weak transcription Primary hematopoietic stem cells short term culture blood
19 chr1:94895600-94903000 Weak transcription Duodenum Mucosa Duodenum
20 chr1:94895600-94904000 Weak transcription Colonic Mucosa Colon
21 chr1:94895600-94905400 Weak transcription Gastric stomach
22 chr1:94895600-94905400 Weak transcription Left Ventricle heart
23 chr1:94895800-94905400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr1:94897200-94902200 Weak transcription Primary B cells from cord blood blood
25 chr1:94897200-94902600 Weak transcription Liver Liver
26 chr1:94897400-94900400 Weak transcription HepG2 liver
27 chr1:94897800-94902600 Weak transcription Cortex derived primary cultured neurospheres brain
28 chr1:94898000-94900800 Weak transcription Stomach Mucosa stomach
29 chr1:94898600-94901600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr1:94899000-94899600 Strong transcription Fetal Intestine Small intestine
31 chr1:94899000-94899800 Weak transcription Fetal Thymus thymus
32 chr1:94899200-94900000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr1:94899200-94900200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:94899200-94901200 Enhancers Sigmoid Colon Sigmoid Colon
35 chr1:94899200-94914800 Weak transcription HSMM muscle
36 chr1:94899400-94899600 Genic enhancers Thymus Thymus
37 chr1:94899400-94902200 Weak transcription Rectal Mucosa Donor 31 rectum
38 chr1:94899400-94905000 Weak transcription Pancreas Pancrea

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Last update: Aug 31, 2015