Variant report

Variant	rs17111347
Chromosome Location	chr1:94761264-94761265
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94760616..94762980-chr1:94789688..94791734,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236098	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10399782	1.00[EUR][1000 genomes]
rs10782981	1.00[EUR][1000 genomes]
rs10874845	1.00[EUR][1000 genomes]
rs1146516	1.00[EUR][1000 genomes]
rs11800866	1.00[EUR][1000 genomes]
rs11801203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11801251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11802178	1.00[EUR][1000 genomes]
rs11802887	1.00[EUR][1000 genomes]
rs11803374	1.00[EUR][1000 genomes]
rs11803749	1.00[EUR][1000 genomes]
rs11805161	1.00[EUR][1000 genomes]
rs11806223	1.00[EUR][1000 genomes]
rs11810728	1.00[AMR][1000 genomes]
rs12069536	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1318396	1.00[EUR][1000 genomes]
rs1330856	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1330858	1.00[EUR][1000 genomes]
rs1330859	1.00[EUR][1000 genomes]
rs1330860	1.00[EUR][1000 genomes]
rs1337856	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1337857	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1361124	1.00[EUR][1000 genomes]
rs1411697	1.00[EUR][1000 genomes]
rs1411703	1.00[EUR][1000 genomes]
rs1571645	1.00[EUR][1000 genomes]
rs1577920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1616972	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1617363	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1617719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687921	1.00[EUR][1000 genomes]
rs1687922	1.00[EUR][1000 genomes]
rs1687923	1.00[EUR][1000 genomes]
rs1687925	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687926	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687938	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687953	1.00[EUR][1000 genomes]
rs1687955	1.00[EUR][1000 genomes]
rs1687958	1.00[EUR][1000 genomes]
rs1687959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687960	1.00[EUR][1000 genomes]
rs1687967	1.00[EUR][1000 genomes]
rs1687969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1749540	1.00[EUR][1000 genomes]
rs1756247	1.00[EUR][1000 genomes]
rs1756256	1.00[EUR][1000 genomes]
rs1756258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756263	1.00[EUR][1000 genomes]
rs1756264	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765624	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765625	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765637	0.84[AFR][1000 genomes]
rs1765638	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765639	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765642	1.00[EUR][1000 genomes]
rs1765653	1.00[EUR][1000 genomes]
rs2021993	1.00[EUR][1000 genomes]
rs2094824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2391471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2483792	1.00[EUR][1000 genomes]
rs2774921	1.00[EUR][1000 genomes]
rs28494821	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2893296	1.00[EUR][1000 genomes]
rs479627	1.00[EUR][1000 genomes]
rs484420	1.00[EUR][1000 genomes]
rs4847297	1.00[EUR][1000 genomes]
rs512648	1.00[EUR][1000 genomes]
rs513976	1.00[EUR][1000 genomes]
rs529642	1.00[EUR][1000 genomes]
rs59778098	1.00[EUR][1000 genomes]
rs598962	1.00[EUR][1000 genomes]
rs610088	1.00[EUR][1000 genomes]
rs630382	1.00[EUR][1000 genomes]
rs6673287	1.00[EUR][1000 genomes]
rs6684237	1.00[EUR][1000 genomes]
rs7417304	1.00[EUR][1000 genomes]
rs7548077	1.00[EUR][1000 genomes]
rs9432270	1.00[EUR][1000 genomes]
rs9432441	1.00[EUR][1000 genomes]
rs9432688	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94752600-94765200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:94759000-94761600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:94759200-94762600	Weak transcription	Spleen	Spleen
4	chr1:94759400-94764400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:94759600-94762200	Weak transcription	HepG2	liver
6	chr1:94760200-94762200	Weak transcription	Lung	lung
7	chr1:94760600-94762000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:94760600-94765600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:94760600-94770000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr1:94760800-94762600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr1:94760800-94762800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:94761000-94761600	Enhancers	Fetal Lung	lung
13	chr1:94761000-94762000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr1:94761000-94764400	Enhancers	HUVEC	blood vessel
15	chr1:94761200-94761400	Enhancers	Adipose Nuclei	Adipose
16	chr1:94761200-94761400	Enhancers	Osteobl	bone
17	chr1:94761200-94761600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:94761200-94762000	Enhancers	HSMM	muscle
19	chr1:94761200-94763200	Enhancers	NHDF-Ad	bronchial
20	chr1:94761200-94764000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:94761200-94767000	Enhancers	NHLF	lung
22	chr1:94761200-94767400	Enhancers	Muscle Satellite Cultured Cells	--
23	chr1:94761200-94768200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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