Variant report

Variant	rs1330859
Chromosome Location	chr1:94648136-94648137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10399782	1.00[EUR][1000 genomes]
rs10782981	0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10874845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11800866	1.00[EUR][1000 genomes]
rs11801203	1.00[EUR][1000 genomes]
rs11801251	1.00[EUR][1000 genomes]
rs11802178	1.00[EUR][1000 genomes]
rs11802887	1.00[EUR][1000 genomes]
rs11803374	1.00[EUR][1000 genomes]
rs11803749	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs11805161	1.00[EUR][1000 genomes]
rs11806223	1.00[EUR][1000 genomes]
rs12069536	1.00[EUR][1000 genomes]
rs1318396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1330856	1.00[EUR][1000 genomes]
rs1330858	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1330860	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1337856	1.00[EUR][1000 genomes]
rs1337857	1.00[EUR][1000 genomes]
rs1361124	1.00[EUR][1000 genomes]
rs1411693	0.80[YRI][hapmap]
rs1411697	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1411703	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs1571645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1577920	1.00[EUR][1000 genomes]
rs1616972	1.00[EUR][1000 genomes]
rs1617363	1.00[EUR][1000 genomes]
rs1617719	1.00[EUR][1000 genomes]
rs1687921	1.00[EUR][1000 genomes]
rs1687922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687925	1.00[EUR][1000 genomes]
rs1687926	1.00[EUR][1000 genomes]
rs1687929	1.00[EUR][1000 genomes]
rs1687934	1.00[EUR][1000 genomes]
rs1687938	1.00[EUR][1000 genomes]
rs1687939	1.00[EUR][1000 genomes]
rs1687942	1.00[EUR][1000 genomes]
rs1687945	1.00[EUR][1000 genomes]
rs1687953	1.00[EUR][1000 genomes]
rs1687955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687958	1.00[EUR][1000 genomes]
rs1687959	1.00[EUR][1000 genomes]
rs1687960	1.00[EUR][1000 genomes]
rs1687967	1.00[EUR][1000 genomes]
rs1687969	1.00[EUR][1000 genomes]
rs17111347	1.00[EUR][1000 genomes]
rs1756247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756256	1.00[EUR][1000 genomes]
rs1756258	1.00[EUR][1000 genomes]
rs1756263	1.00[EUR][1000 genomes]
rs1756264	1.00[EUR][1000 genomes]
rs1765616	1.00[EUR][1000 genomes]
rs1765624	1.00[EUR][1000 genomes]
rs1765625	1.00[EUR][1000 genomes]
rs1765631	1.00[EUR][1000 genomes]
rs1765633	1.00[EUR][1000 genomes]
rs1765634	1.00[EUR][1000 genomes]
rs1765638	1.00[EUR][1000 genomes]
rs1765639	1.00[EUR][1000 genomes]
rs1765642	1.00[EUR][1000 genomes]
rs2021993	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs2094824	1.00[EUR][1000 genomes]
rs2150267	1.00[YRI][hapmap]
rs2391471	1.00[EUR][1000 genomes]
rs2483792	1.00[EUR][1000 genomes]
rs2774921	1.00[EUR][1000 genomes]
rs28494821	1.00[EUR][1000 genomes]
rs2893296	1.00[EUR][1000 genomes]
rs4847297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59778098	1.00[EUR][1000 genomes]
rs6673287	1.00[EUR][1000 genomes]
rs6684237	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7417304	1.00[EUR][1000 genomes]
rs7547705	0.82[YRI][hapmap]
rs7548077	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs9432270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9432441	1.00[EUR][1000 genomes]
rs9432688	1.00[EUR][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94634200-94656600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:94634200-94658400	Strong transcription	HSMM	muscle
3	chr1:94634200-94660800	Strong transcription	NH-A	brain
4	chr1:94634200-94661800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:94634200-94675200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr1:94634400-94660400	Strong transcription	NHDF-Ad	bronchial
7	chr1:94634600-94662000	Strong transcription	HMEC	breast
8	chr1:94635000-94658000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:94636000-94658400	Strong transcription	Liver	Liver
10	chr1:94636200-94673400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:94637600-94650800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr1:94637800-94648800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:94637800-94656200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:94638200-94654400	Weak transcription	Ovary	ovary
15	chr1:94638400-94669200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:94639200-94649000	Weak transcription	Right Atrium	heart
17	chr1:94639400-94651200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:94640000-94650200	Weak transcription	Psoas Muscle	Psoas
19	chr1:94640000-94684800	Weak transcription	Spleen	Spleen
20	chr1:94640200-94648800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:94640200-94667800	Weak transcription	Gastric	stomach
22	chr1:94641800-94657600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr1:94642200-94650800	Weak transcription	Colon Smooth Muscle	Colon
24	chr1:94642400-94684600	Weak transcription	Fetal Stomach	stomach
25	chr1:94643200-94652000	Strong transcription	NHEK	skin
26	chr1:94643400-94668800	Weak transcription	Stomach Mucosa	stomach
27	chr1:94643600-94652800	Strong transcription	HepG2	liver
28	chr1:94644600-94664400	Weak transcription	A549	lung
29	chr1:94644800-94648800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr1:94644800-94648800	Weak transcription	Right Ventricle	heart
31	chr1:94644800-94657600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr1:94644800-94657800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr1:94644800-94670000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr1:94644800-94684400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr1:94645000-94667000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:94645000-94687600	Weak transcription	Pancreas	Pancrea
37	chr1:94645200-94663600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr1:94645600-94656400	Weak transcription	Fetal Intestine Large	intestine
39	chr1:94645800-94658200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr1:94646000-94649400	Genic enhancers	HUVEC	blood vessel
41	chr1:94646000-94652800	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr1:94646200-94649800	Enhancers	Fetal Heart	heart
43	chr1:94646800-94649200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr1:94647000-94648800	Weak transcription	Fetal Kidney	kidney
45	chr1:94647000-94667800	Weak transcription	Aorta	Aorta
46	chr1:94647000-94667800	Weak transcription	Lung	lung
47	chr1:94647200-94648200	Weak transcription	NHLF	lung
48	chr1:94647200-94648800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr1:94647200-94648800	Weak transcription	Fetal Muscle Leg	muscle
50	chr1:94647200-94650200	Weak transcription	Placenta	Placenta

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