Variant report

Variant	rs2774921
Chromosome Location	chr1:94608294-94608295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:94608076..94610024-chr1:94701654..94703590,2	MCF-7	breast:
2	chr1:94596499..94598702-chr1:94606759..94609677,2	K562	blood:
3	chr1:94564366..94567195-chr1:94607779..94609670,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137962	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10782981	1.00[EUR][1000 genomes]
rs10874845	1.00[EUR][1000 genomes]
rs11800866	1.00[EUR][1000 genomes]
rs11801203	1.00[EUR][1000 genomes]
rs11801251	1.00[EUR][1000 genomes]
rs11802178	1.00[EUR][1000 genomes]
rs11802887	1.00[EUR][1000 genomes]
rs11803374	1.00[EUR][1000 genomes]
rs11803749	1.00[EUR][1000 genomes]
rs11805161	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11806223	1.00[EUR][1000 genomes]
rs12069536	1.00[EUR][1000 genomes]
rs1318396	1.00[EUR][1000 genomes]
rs1330856	1.00[EUR][1000 genomes]
rs1330858	1.00[EUR][1000 genomes]
rs1330859	1.00[EUR][1000 genomes]
rs1330860	1.00[EUR][1000 genomes]
rs1337856	1.00[EUR][1000 genomes]
rs1337857	1.00[EUR][1000 genomes]
rs1361124	1.00[EUR][1000 genomes]
rs1411697	1.00[EUR][1000 genomes]
rs1411703	1.00[EUR][1000 genomes]
rs1571645	1.00[EUR][1000 genomes]
rs1616972	1.00[EUR][1000 genomes]
rs1617363	1.00[EUR][1000 genomes]
rs1687921	1.00[EUR][1000 genomes]
rs1687922	1.00[EUR][1000 genomes]
rs1687923	1.00[EUR][1000 genomes]
rs1687925	1.00[EUR][1000 genomes]
rs1687926	1.00[EUR][1000 genomes]
rs1687929	1.00[EUR][1000 genomes]
rs1687934	1.00[EUR][1000 genomes]
rs1687945	1.00[EUR][1000 genomes]
rs1687953	1.00[EUR][1000 genomes]
rs1687955	1.00[EUR][1000 genomes]
rs1687958	1.00[EUR][1000 genomes]
rs1687959	1.00[EUR][1000 genomes]
rs1687960	1.00[EUR][1000 genomes]
rs1687967	1.00[EUR][1000 genomes]
rs17111347	1.00[EUR][1000 genomes]
rs1756247	1.00[EUR][1000 genomes]
rs1756256	1.00[EUR][1000 genomes]
rs1756258	1.00[EUR][1000 genomes]
rs1756263	1.00[EUR][1000 genomes]
rs1756264	1.00[EUR][1000 genomes]
rs1765616	1.00[EUR][1000 genomes]
rs1765624	1.00[EUR][1000 genomes]
rs1765638	1.00[EUR][1000 genomes]
rs1765639	1.00[EUR][1000 genomes]
rs1765642	1.00[EUR][1000 genomes]
rs2021993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2094824	1.00[EUR][1000 genomes]
rs2391471	1.00[EUR][1000 genomes]
rs2483792	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28494821	1.00[EUR][1000 genomes]
rs2893296	1.00[EUR][1000 genomes]
rs4847297	1.00[EUR][1000 genomes]
rs59778098	1.00[EUR][1000 genomes]
rs6541407	1.00[EUR][1000 genomes]
rs6673287	1.00[EUR][1000 genomes]
rs6675622	1.00[EUR][1000 genomes]
rs6684237	1.00[EUR][1000 genomes]
rs6696070	1.00[EUR][1000 genomes]
rs72972731	1.00[EUR][1000 genomes]
rs72972736	1.00[EUR][1000 genomes]
rs72972747	1.00[EUR][1000 genomes]
rs72972748	1.00[EUR][1000 genomes]
rs7417304	1.00[EUR][1000 genomes]
rs7521107	1.00[EUR][1000 genomes]
rs7530436	1.00[EUR][1000 genomes]
rs7530531	1.00[EUR][1000 genomes]
rs7537686	1.00[EUR][1000 genomes]
rs7542402	1.00[EUR][1000 genomes]
rs7542625	1.00[EUR][1000 genomes]
rs7548077	1.00[EUR][1000 genomes]
rs9432270	1.00[EUR][1000 genomes]
rs9432441	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9432688	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871416	chr1:94566311-94635028	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv871306	chr1:94579426-94609478	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv871210	chr1:94579426-94629643	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94600600-94612200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:94606400-94609200	Enhancers	HUVEC	blood vessel
3	chr1:94607000-94608600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:94607200-94608400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr1:94607200-94608400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:94607200-94608400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:94607200-94608400	Enhancers	HSMM	muscle
8	chr1:94607200-94608400	Enhancers	NH-A	brain
9	chr1:94607200-94608600	Enhancers	HSMMtube	muscle
10	chr1:94607200-94608800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:94607200-94609200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:94607400-94608400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:94607400-94609200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr1:94607600-94608400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:94607600-94608400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr1:94607600-94609000	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr1:94607800-94608400	Enhancers	NHDF-Ad	bronchial
18	chr1:94608000-94608400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:94608000-94608400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:94608000-94608400	Enhancers	Left Ventricle	heart
21	chr1:94608000-94614400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr1:94608200-94608400	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr1:94608200-94609000	Enhancers	Esophagus	oesophagus
24	chr1:94608200-94609000	Enhancers	Right Atrium	heart

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