Variant report

Variant	rs72972731
Chromosome Location	chr1:94432392-94432393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94431420..94433973-chr1:94440220..94443089,2	MCF-7	breast:
2	chr1:94430616..94432695-chr1:94432755..94434649,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11800866	1.00[EUR][1000 genomes]
rs11802178	1.00[EUR][1000 genomes]
rs11802887	1.00[EUR][1000 genomes]
rs11803374	1.00[EUR][1000 genomes]
rs11803749	1.00[EUR][1000 genomes]
rs11805161	1.00[EUR][1000 genomes]
rs11806223	1.00[EUR][1000 genomes]
rs12068954	1.00[EUR][1000 genomes]
rs17110613	1.00[EUR][1000 genomes]
rs2021993	1.00[EUR][1000 genomes]
rs2483792	1.00[EUR][1000 genomes]
rs2774921	1.00[EUR][1000 genomes]
rs35650636	1.00[EUR][1000 genomes]
rs58126899	1.00[EUR][1000 genomes]
rs58750328	1.00[EUR][1000 genomes]
rs59493724	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59653321	1.00[EUR][1000 genomes]
rs59778098	1.00[EUR][1000 genomes]
rs60179644	1.00[EUR][1000 genomes]
rs60188127	1.00[EUR][1000 genomes]
rs60226009	1.00[EUR][1000 genomes]
rs60680584	1.00[EUR][1000 genomes]
rs61564641	1.00[EUR][1000 genomes]
rs6541407	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6661879	1.00[EUR][1000 genomes]
rs6673287	1.00[EUR][1000 genomes]
rs6675622	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6677068	1.00[EUR][1000 genomes]
rs6696070	1.00[EUR][1000 genomes]
rs6703195	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72967379	1.00[EUR][1000 genomes]
rs72971232	1.00[EUR][1000 genomes]
rs72971262	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72971265	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72971278	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72971281	1.00[EUR][1000 genomes]
rs72971288	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72972706	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72972736	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72972747	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72972748	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7521107	1.00[EUR][1000 genomes]
rs7526263	1.00[EUR][1000 genomes]
rs7530436	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7530531	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7537686	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7541690	1.00[EUR][1000 genomes]
rs7542402	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7542625	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7543184	1.00[EUR][1000 genomes]
rs7548581	1.00[EUR][1000 genomes]
rs9432441	1.00[EUR][1000 genomes]
rs9432688	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516137	chr1:94404238-94504545	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94422600-94445000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:94423600-94433200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:94423600-94434800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:94425600-94435600	Enhancers	HMEC	breast
5	chr1:94426200-94432400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:94427200-94435200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:94429400-94433000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:94429600-94433000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:94429800-94435400	Enhancers	NHEK	skin
10	chr1:94430600-94433000	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr1:94430600-94433000	Weak transcription	HSMMtube	muscle
12	chr1:94430800-94432400	Enhancers	Pancreas	Pancrea
13	chr1:94430800-94432400	Enhancers	HepG2	liver
14	chr1:94431000-94432400	Enhancers	Liver	Liver
15	chr1:94431000-94432800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:94431000-94432800	Weak transcription	HSMM	muscle
17	chr1:94431000-94433000	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr1:94431000-94434400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr1:94431200-94433000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:94431200-94433400	Enhancers	Psoas Muscle	Psoas
21	chr1:94431400-94432800	Weak transcription	Osteobl	bone
22	chr1:94431400-94434400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:94431400-94435600	Weak transcription	Esophagus	oesophagus
24	chr1:94431600-94432800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:94431600-94433000	Weak transcription	Placenta	Placenta
26	chr1:94431600-94433000	Weak transcription	A549	lung
27	chr1:94431600-94433000	Weak transcription	NH-A	brain
28	chr1:94431800-94433000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr1:94431800-94434400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr1:94431800-94434600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr1:94432200-94432600	Enhancers	Fetal Brain Male	brain
32	chr1:94432200-94433400	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links