Variant report

Variant	rs72971288
Chromosome Location	chr1:94415402-94415403
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11800866	1.00[EUR][1000 genomes]
rs11802178	1.00[EUR][1000 genomes]
rs11802887	1.00[EUR][1000 genomes]
rs11803374	1.00[EUR][1000 genomes]
rs11803749	1.00[EUR][1000 genomes]
rs11806223	1.00[EUR][1000 genomes]
rs12068954	1.00[EUR][1000 genomes]
rs17110613	1.00[EUR][1000 genomes]
rs35650636	1.00[EUR][1000 genomes]
rs58126899	1.00[EUR][1000 genomes]
rs58750328	1.00[EUR][1000 genomes]
rs59493724	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59653321	1.00[EUR][1000 genomes]
rs59778098	1.00[EUR][1000 genomes]
rs60179644	1.00[EUR][1000 genomes]
rs60188127	1.00[EUR][1000 genomes]
rs60226009	1.00[EUR][1000 genomes]
rs60680584	1.00[EUR][1000 genomes]
rs61564641	1.00[EUR][1000 genomes]
rs6541407	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6661879	1.00[EUR][1000 genomes]
rs6673287	1.00[EUR][1000 genomes]
rs6675622	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6677068	1.00[EUR][1000 genomes]
rs6696070	1.00[EUR][1000 genomes]
rs6703195	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72967379	1.00[EUR][1000 genomes]
rs72971232	1.00[EUR][1000 genomes]
rs72971262	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72971265	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72971278	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72971281	1.00[EUR][1000 genomes]
rs72972706	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72972731	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72972736	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72972747	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72972748	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7521107	1.00[EUR][1000 genomes]
rs7526263	1.00[EUR][1000 genomes]
rs7530436	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7530531	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7537686	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7541690	1.00[EUR][1000 genomes]
rs7542402	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7542625	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7543184	1.00[EUR][1000 genomes]
rs7548581	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516137	chr1:94404238-94504545	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94375600-94421200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:94415200-94416000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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