Variant report

Variant	rs60188127
Chromosome Location	chr1:94255778-94255779
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94145860..94148014-chr1:94253915..94255872,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137936	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10489541	1.00[EUR][1000 genomes]
rs11164954	1.00[EUR][1000 genomes]
rs11800247	1.00[EUR][1000 genomes]
rs11802499	1.00[EUR][1000 genomes]
rs11805042	1.00[EUR][1000 genomes]
rs12068954	1.00[EUR][1000 genomes]
rs17110193	1.00[EUR][1000 genomes]
rs17110312	1.00[EUR][1000 genomes]
rs17110320	1.00[EUR][1000 genomes]
rs17110613	1.00[EUR][1000 genomes]
rs2221923	1.00[EUR][1000 genomes]
rs236309	1.00[EUR][1000 genomes]
rs35650636	1.00[EUR][1000 genomes]
rs58024738	1.00[EUR][1000 genomes]
rs58126899	1.00[EUR][1000 genomes]
rs58679238	1.00[EUR][1000 genomes]
rs58750328	1.00[EUR][1000 genomes]
rs59493724	1.00[EUR][1000 genomes]
rs59653321	1.00[EUR][1000 genomes]
rs60179644	1.00[EUR][1000 genomes]
rs60226009	1.00[EUR][1000 genomes]
rs60680584	1.00[EUR][1000 genomes]
rs61372707	1.00[EUR][1000 genomes]
rs61564641	1.00[EUR][1000 genomes]
rs6541391	1.00[EUR][1000 genomes]
rs6541392	1.00[EUR][1000 genomes]
rs6541407	1.00[EUR][1000 genomes]
rs6661879	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6671646	1.00[EUR][1000 genomes]
rs6675622	1.00[EUR][1000 genomes]
rs6677068	1.00[EUR][1000 genomes]
rs6686775	1.00[EUR][1000 genomes]
rs6696070	1.00[EUR][1000 genomes]
rs6703195	1.00[EUR][1000 genomes]
rs72963382	1.00[EUR][1000 genomes]
rs72967379	1.00[EUR][1000 genomes]
rs72971232	1.00[EUR][1000 genomes]
rs72971262	1.00[EUR][1000 genomes]
rs72971265	1.00[EUR][1000 genomes]
rs72971278	1.00[EUR][1000 genomes]
rs72971281	1.00[EUR][1000 genomes]
rs72971288	1.00[EUR][1000 genomes]
rs72972706	1.00[EUR][1000 genomes]
rs72972731	1.00[EUR][1000 genomes]
rs72972736	1.00[EUR][1000 genomes]
rs72972747	1.00[EUR][1000 genomes]
rs72972748	1.00[EUR][1000 genomes]
rs7521107	1.00[EUR][1000 genomes]
rs7525976	1.00[EUR][1000 genomes]
rs7526263	1.00[EUR][1000 genomes]
rs7530436	1.00[EUR][1000 genomes]
rs7530531	1.00[EUR][1000 genomes]
rs7537686	1.00[EUR][1000 genomes]
rs7541690	1.00[EUR][1000 genomes]
rs7542402	1.00[EUR][1000 genomes]
rs7542625	1.00[EUR][1000 genomes]
rs7543184	1.00[EUR][1000 genomes]
rs7548581	1.00[EUR][1000 genomes]
rs871855	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546822	chr1:94246577-94289863	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1815663	chr1:94246577-94291252	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1877	chr1:94247756-94292908	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94246800-94266600	Weak transcription	A549	lung
2	chr1:94249000-94263600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:94252000-94263600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links