Variant report

Variant	rs61372707
Chromosome Location	chr1:94070705-94070706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:94069529..94071439-chr1:94145255..94148643,3	MCF-7	breast:
2	chr1:94070552..94073246-chr1:94081177..94083185,2	MCF-7	breast:
3	chr1:94065959..94068232-chr1:94070437..94072703,2	MCF-7	breast:
4	chr1:93912846..93915784-chr1:94069599..94071405,2	MCF-7	breast:
5	chr1:94069721..94071694-chr1:94073656..94075226,2	K562	blood:

Variant related genes	Relation type
ENSG00000137936	Chromatin interaction
ENSG00000137942	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10489541	1.00[EUR][1000 genomes]
rs11164954	1.00[EUR][1000 genomes]
rs11800247	1.00[EUR][1000 genomes]
rs11802498	1.00[AMR][1000 genomes]
rs11802499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11805042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11806965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11809347	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1593513	1.00[EUR][1000 genomes]
rs1593514	1.00[EUR][1000 genomes]
rs1593515	1.00[EUR][1000 genomes]
rs17110193	1.00[EUR][1000 genomes]
rs17110312	1.00[EUR][1000 genomes]
rs17110320	1.00[EUR][1000 genomes]
rs2221923	1.00[EUR][1000 genomes]
rs236309	1.00[EUR][1000 genomes]
rs4475764	1.00[EUR][1000 genomes]
rs57453256	1.00[EUR][1000 genomes]
rs58024738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58591926	1.00[EUR][1000 genomes]
rs58679238	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59653321	1.00[EUR][1000 genomes]
rs60188127	1.00[EUR][1000 genomes]
rs6541391	1.00[EUR][1000 genomes]
rs6541392	1.00[EUR][1000 genomes]
rs6657187	1.00[EUR][1000 genomes]
rs6661879	1.00[EUR][1000 genomes]
rs6671646	1.00[EUR][1000 genomes]
rs6686775	1.00[EUR][1000 genomes]
rs72963382	1.00[EUR][1000 genomes]
rs7525976	1.00[EUR][1000 genomes]
rs871855	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482370	chr1:94000799-94183692	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv2755338	chr1:94059579-94176079	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94025600-94073800	Weak transcription	Fetal Brain Female	brain
2	chr1:94057400-94071000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:94057600-94106400	Weak transcription	Primary B cells from cord blood	blood
4	chr1:94060200-94078800	Weak transcription	Colonic Mucosa	Colon
5	chr1:94061200-94078800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:94062600-94073000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr1:94064400-94073800	Weak transcription	Aorta	Aorta
8	chr1:94064400-94074200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:94064800-94073200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:94065000-94071000	Weak transcription	Colon Smooth Muscle	Colon
11	chr1:94065000-94071200	Weak transcription	HUVEC	blood vessel
12	chr1:94065000-94073800	Weak transcription	Esophagus	oesophagus
13	chr1:94065000-94073800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr1:94065200-94071000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr1:94066200-94073800	Weak transcription	Fetal Stomach	stomach
16	chr1:94066400-94079200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr1:94066400-94079600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr1:94066600-94072400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr1:94066600-94073000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr1:94066800-94070800	Weak transcription	Brain Anterior Caudate	brain
21	chr1:94067200-94071800	Weak transcription	Liver	Liver
22	chr1:94067200-94072000	Weak transcription	Right Ventricle	heart
23	chr1:94067600-94070800	Strong transcription	NHEK	skin
24	chr1:94068000-94071000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr1:94068000-94072400	Weak transcription	Lung	lung
26	chr1:94068200-94079200	Genic enhancers	HSMM	muscle
27	chr1:94068400-94071200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr1:94068600-94072000	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr1:94068800-94071800	Enhancers	Duodenum Mucosa	Duodenum
30	chr1:94068800-94075800	Enhancers	HSMMtube	muscle
31	chr1:94069000-94071200	Genic enhancers	HMEC	breast
32	chr1:94069000-94071800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr1:94069000-94072000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr1:94069200-94071000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr1:94069400-94070800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr1:94069400-94071200	Enhancers	Muscle Satellite Cultured Cells	--
37	chr1:94069400-94071400	Weak transcription	Fetal Muscle Leg	muscle
38	chr1:94069400-94071400	Weak transcription	Right Atrium	heart
39	chr1:94069400-94071800	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr1:94069400-94072000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:94069400-94072000	Weak transcription	Left Ventricle	heart
42	chr1:94069400-94073000	Weak transcription	Placenta	Placenta
43	chr1:94069400-94073200	Weak transcription	Brain Hippocampus Middle	brain
44	chr1:94069400-94074400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr1:94069600-94072000	Genic enhancers	HepG2	liver
46	chr1:94069600-94072200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr1:94069600-94075800	Genic enhancers	Hela-S3	cervix
48	chr1:94069800-94071600	Enhancers	Stomach Mucosa	stomach
49	chr1:94070000-94070800	Enhancers	NHDF-Ad	bronchial
50	chr1:94070000-94071000	Enhancers	Psoas Muscle	Psoas

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