Variant report

Variant	rs1593513
Chromosome Location	chr1:93895801-93895802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10489541	1.00[EUR][1000 genomes]
rs11164911	1.00[JPT][hapmap]
rs11164954	1.00[EUR][1000 genomes]
rs11799875	1.00[EUR][1000 genomes]
rs11799928	1.00[JPT][hapmap]
rs11800247	1.00[EUR][1000 genomes]
rs11800760	1.00[JPT][hapmap]
rs11801175	1.00[JPT][hapmap]
rs11802420	1.00[JPT][hapmap]
rs11802499	1.00[EUR][1000 genomes]
rs11805042	1.00[EUR][1000 genomes]
rs11806965	1.00[EUR][1000 genomes]
rs11809347	1.00[EUR][1000 genomes]
rs1593514	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1593515	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110193	1.00[EUR][1000 genomes]
rs1863500	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs236309	1.00[EUR][1000 genomes]
rs237424	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs237426	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs237427	0.82[ASN][1000 genomes]
rs237428	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs237429	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs237430	0.82[ASN][1000 genomes]
rs2449377	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs2493642	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs2493643	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2554841	0.82[ASN][1000 genomes]
rs2624438	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs2818968	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs35709587	1.00[EUR][1000 genomes]
rs41528947	1.00[JPT][hapmap]
rs4475764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4847409	1.00[JPT][hapmap]
rs556888	1.00[JPT][hapmap]
rs57438388	0.82[ASN][1000 genomes]
rs57440609	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57453256	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58042552	1.00[EUR][1000 genomes]
rs58212333	0.94[ASN][1000 genomes]
rs58430978	0.82[ASN][1000 genomes]
rs58518453	1.00[EUR][1000 genomes]
rs58591926	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58679238	1.00[EUR][1000 genomes]
rs59039419	0.82[ASN][1000 genomes]
rs60515224	0.94[ASN][1000 genomes]
rs60717381	0.82[ASN][1000 genomes]
rs60807198	1.00[EUR][1000 genomes]
rs61096581	0.87[ASN][1000 genomes]
rs61231069	0.87[ASN][1000 genomes]
rs61372707	1.00[EUR][1000 genomes]
rs628714	1.00[JPT][hapmap]
rs637198	1.00[JPT][hapmap]
rs6541348	1.00[JPT][hapmap]
rs6541351	1.00[CHD][hapmap]
rs6541360	1.00[JPT][hapmap]
rs6657187	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6667540	1.00[JPT][hapmap]
rs668944	1.00[JPT][hapmap]
rs6704067	1.00[JPT][hapmap]
rs72961357	0.94[ASN][1000 genomes]
rs72961366	0.94[ASN][1000 genomes]
rs72961373	0.82[ASN][1000 genomes]
rs72961379	0.82[ASN][1000 genomes]
rs72961386	0.82[ASN][1000 genomes]
rs72961389	0.82[ASN][1000 genomes]
rs72963382	1.00[EUR][1000 genomes]
rs7518171	1.00[JPT][hapmap]
rs7519163	1.00[JPT][hapmap]
rs7545358	1.00[JPT][hapmap]
rs7547495	0.82[ASN][1000 genomes]
rs7554661	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs8489	1.00[JPT][hapmap]
rs8561	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3375834	chr1:93872980-93904647	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93893600-93898000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:93893600-93899200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:93893600-93899200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:93893600-93899400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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