Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1593513	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1593514	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1593515	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1863500	0.82[ASN][1000 genomes]
rs237424	0.82[ASN][1000 genomes]
rs237426	0.82[ASN][1000 genomes]
rs237427	0.82[ASN][1000 genomes]
rs237428	0.82[ASN][1000 genomes]
rs237429	0.82[ASN][1000 genomes]
rs237430	0.82[ASN][1000 genomes]
rs2449377	0.82[ASN][1000 genomes]
rs2493642	0.82[ASN][1000 genomes]
rs2554841	0.82[ASN][1000 genomes]
rs2624438	0.82[ASN][1000 genomes]
rs2818968	0.82[ASN][1000 genomes]
rs4475764	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57438388	0.82[ASN][1000 genomes]
rs57453256	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58212333	0.94[ASN][1000 genomes]
rs58430978	0.82[ASN][1000 genomes]
rs58591926	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59039419	0.82[ASN][1000 genomes]
rs60515224	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60717381	0.82[ASN][1000 genomes]
rs61096581	0.87[ASN][1000 genomes]
rs61231069	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6657187	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72961357	0.94[ASN][1000 genomes]
rs72961366	0.94[ASN][1000 genomes]
rs72961373	0.82[ASN][1000 genomes]
rs72961379	0.82[ASN][1000 genomes]
rs72961386	0.82[ASN][1000 genomes]
rs72961389	0.82[ASN][1000 genomes]
rs7547495	0.82[ASN][1000 genomes]
rs7554661	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3375834	chr1:93872980-93904647	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93891800-93892800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
2	chr1:93891800-93893600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:93891800-93893600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:93892000-93893000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:93892000-93893000	Enhancers	Fetal Muscle Leg	muscle
6	chr1:93892000-93893600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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