Variant report

Variant	rs72961389
Chromosome Location	chr1:93965581-93965582
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:93944108..93946420-chr1:93963854..93966573,2	K562	blood:
2	chr1:93963303..93967401-chr1:93968179..93972318,5	K562	blood:
3	chr1:93953249..93955346-chr1:93962847..93965723,2	K562	blood:
4	chr1:93965020..93966989-chr1:94096197..94098181,2	K562	blood:
5	chr1:93811228..93813436-chr1:93964094..93965769,2	K562	blood:

Variant related genes	Relation type
ENSG00000212601	Chromatin interaction
ENSG00000117505	Chromatin interaction
ENSG00000223745	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11164950	1.00[EUR][1000 genomes]
rs1593513	0.82[ASN][1000 genomes]
rs1593514	0.82[ASN][1000 genomes]
rs1593515	0.82[ASN][1000 genomes]
rs1863500	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs236325	1.00[EUR][1000 genomes]
rs236327	1.00[EUR][1000 genomes]
rs236328	1.00[EUR][1000 genomes]
rs236334	1.00[EUR][1000 genomes]
rs237424	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs237426	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs237427	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs237428	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs237429	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs237430	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2449377	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2493642	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2493643	0.89[ASN][1000 genomes]
rs2554841	1.00[ASN][1000 genomes]
rs2624438	1.00[ASN][1000 genomes]
rs2818968	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4475764	0.82[ASN][1000 genomes]
rs57438388	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57440609	0.82[ASN][1000 genomes]
rs57453256	0.82[ASN][1000 genomes]
rs57974365	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58212333	0.88[ASN][1000 genomes]
rs58430978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58591926	0.82[ASN][1000 genomes]
rs59039419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60515224	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60717381	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61096581	0.82[ASN][1000 genomes]
rs61231069	0.82[ASN][1000 genomes]
rs6657187	0.82[ASN][1000 genomes]
rs72961357	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72961366	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72961373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961379	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7547495	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7553492	1.00[EUR][1000 genomes]
rs7554661	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93943200-93974400	Weak transcription	Fetal Lung	lung
2	chr1:93944000-93974600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:93944200-93971800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:93944200-93974800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:93946800-93973200	Weak transcription	Fetal Intestine Small	intestine
6	chr1:93950400-93974800	Weak transcription	HepG2	liver
7	chr1:93951000-93972800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:93952600-93973600	Weak transcription	Brain Germinal Matrix	brain
9	chr1:93954200-93968000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:93954400-93967000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:93955600-93965600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:93956200-93974000	Weak transcription	HMEC	breast
13	chr1:93956400-93975200	Weak transcription	Fetal Stomach	stomach
14	chr1:93956600-93967000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr1:93958000-93997200	Weak transcription	HSMMtube	muscle
16	chr1:93958400-93965600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:93958800-93991800	Weak transcription	Gastric	stomach
18	chr1:93959000-93974800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:93960000-93965800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr1:93960000-93968400	Weak transcription	Small Intestine	intestine
21	chr1:93960200-93965800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr1:93960200-93974400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr1:93960400-93970200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr1:93961000-93988400	Weak transcription	HUVEC	blood vessel
25	chr1:93961600-93965800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr1:93962600-93984200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr1:93963800-93965800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr1:93964000-93972800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:93964200-93965800	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr1:93964200-93965800	Weak transcription	Fetal Intestine Large	intestine
31	chr1:93964400-93966800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr1:93964400-93974800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr1:93964600-93968000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr1:93964600-93968600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr1:93964600-93973000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr1:93964600-93990200	Weak transcription	HSMM	muscle
37	chr1:93964600-94015200	Weak transcription	Fetal Brain Male	brain
38	chr1:93964800-93974400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr1:93964800-93974600	Weak transcription	Fetal Muscle Leg	muscle
40	chr1:93965000-93965600	Active TSS	K562	blood
41	chr1:93965000-93968000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr1:93965000-93968600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr1:93965000-94013200	Weak transcription	Adipose Nuclei	Adipose
44	chr1:93965000-94017400	Weak transcription	Stomach Mucosa	stomach
45	chr1:93965200-93967000	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr1:93965200-93974200	Weak transcription	Fetal Muscle Trunk	muscle
47	chr1:93965200-93974600	Weak transcription	Fetal Kidney	kidney
48	chr1:93965200-93974800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr1:93965200-93984600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr1:93965200-93984800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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