Variant report

Variant	rs72961379
Chromosome Location	chr1:93955813-93955814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CCNT2	chr1:93955755-93955910	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93955188..93957136-chr1:93959223..93960839,2	K562	blood:

Variant related genes	Relation type
RNA5SP53	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11164950	1.00[EUR][1000 genomes]
rs1593513	0.82[ASN][1000 genomes]
rs1593514	0.82[ASN][1000 genomes]
rs1593515	0.82[ASN][1000 genomes]
rs1863500	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs236325	1.00[EUR][1000 genomes]
rs236327	1.00[EUR][1000 genomes]
rs236328	1.00[EUR][1000 genomes]
rs236334	1.00[EUR][1000 genomes]
rs237424	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs237426	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs237427	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs237428	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs237429	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs237430	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2449377	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2493642	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2493643	0.89[ASN][1000 genomes]
rs2554841	1.00[ASN][1000 genomes]
rs2624438	1.00[ASN][1000 genomes]
rs2818968	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4475764	0.82[ASN][1000 genomes]
rs57438388	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57440609	0.82[ASN][1000 genomes]
rs57453256	0.82[ASN][1000 genomes]
rs57974365	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58212333	0.88[ASN][1000 genomes]
rs58430978	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58591926	0.82[ASN][1000 genomes]
rs59039419	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60515224	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60717381	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61096581	0.82[ASN][1000 genomes]
rs61231069	0.82[ASN][1000 genomes]
rs6657187	0.82[ASN][1000 genomes]
rs72961357	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72961366	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72961373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961386	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72961389	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7547495	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7553492	1.00[EUR][1000 genomes]
rs7554661	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93943200-93974400	Weak transcription	Fetal Lung	lung
2	chr1:93944000-93974600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:93944200-93971800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:93944200-93974800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:93945200-93958000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:93946800-93958000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:93946800-93973200	Weak transcription	Fetal Intestine Small	intestine
8	chr1:93950200-93959400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:93950400-93974800	Weak transcription	HepG2	liver
10	chr1:93951000-93972800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:93951600-93960000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr1:93952400-93956600	Weak transcription	Small Intestine	intestine
13	chr1:93952400-93958600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:93952600-93973600	Weak transcription	Brain Germinal Matrix	brain
15	chr1:93952800-93959800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:93954200-93956800	Weak transcription	Left Ventricle	heart
17	chr1:93954200-93968000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr1:93954400-93967000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr1:93954600-93956200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:93954800-93956000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:93954800-93956200	Enhancers	HMEC	breast
22	chr1:93954800-93956400	Enhancers	HUVEC	blood vessel
23	chr1:93954800-93959200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr1:93955000-93956800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr1:93955400-93956400	Enhancers	Adipose Nuclei	Adipose
26	chr1:93955600-93956400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:93955600-93956400	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr1:93955600-93965600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr1:93955800-93956400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr1:93955800-93956400	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr1:93955800-93960000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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