Variant report

Variant	rs7553492
Chromosome Location	chr1:93924486-93924487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:93921576..93924878-chr1:93939803..93941437,3	K562	blood:
2	chr1:93918228..93920338-chr1:93923063..93925812,2	K562	blood:
3	chr1:93919359..93921378-chr1:93922417..93924785,2	MCF-7	breast:
4	chr1:93922785..93924778-chr1:93927181..93929683,2	K562	blood:
5	chr1:93922785..93925448-chr1:93927181..93928784,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11164950	1.00[EUR][1000 genomes]
rs1863500	1.00[EUR][1000 genomes]
rs236325	1.00[EUR][1000 genomes]
rs236327	1.00[EUR][1000 genomes]
rs236328	1.00[EUR][1000 genomes]
rs236334	1.00[EUR][1000 genomes]
rs237424	1.00[EUR][1000 genomes]
rs237426	1.00[EUR][1000 genomes]
rs237427	1.00[EUR][1000 genomes]
rs237428	1.00[EUR][1000 genomes]
rs237429	1.00[EUR][1000 genomes]
rs237430	1.00[EUR][1000 genomes]
rs2449377	1.00[EUR][1000 genomes]
rs2493642	1.00[EUR][1000 genomes]
rs2818968	1.00[EUR][1000 genomes]
rs57438388	1.00[EUR][1000 genomes]
rs57974365	1.00[EUR][1000 genomes]
rs58430978	1.00[EUR][1000 genomes]
rs59039419	1.00[EUR][1000 genomes]
rs60515224	1.00[EUR][1000 genomes]
rs60717381	1.00[EUR][1000 genomes]
rs6661495	1.00[AMR][1000 genomes]
rs72961357	1.00[EUR][1000 genomes]
rs72961366	1.00[EUR][1000 genomes]
rs72961373	1.00[EUR][1000 genomes]
rs72961379	1.00[EUR][1000 genomes]
rs72961386	1.00[EUR][1000 genomes]
rs72961389	1.00[EUR][1000 genomes]
rs7547495	1.00[EUR][1000 genomes]
rs7554661	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93915200-93926800	Weak transcription	Pancreas	Pancrea
2	chr1:93915200-93927800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:93915200-93928600	Weak transcription	Ovary	ovary
4	chr1:93915200-93929600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr1:93915200-93929800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:93915200-93935800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:93915200-93937000	Weak transcription	Esophagus	oesophagus
8	chr1:93915200-93937000	Weak transcription	Lung	lung
9	chr1:93915400-93924600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:93915400-93926600	Weak transcription	Liver	Liver
11	chr1:93915400-93926800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr1:93915400-93926800	Weak transcription	Psoas Muscle	Psoas
13	chr1:93915400-93929800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr1:93915400-93931000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr1:93916400-93924600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:93916400-93926600	Weak transcription	Primary B cells from cord blood	blood
17	chr1:93916400-93934800	Weak transcription	Fetal Intestine Large	intestine
18	chr1:93916600-93925600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr1:93916600-93926000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr1:93916800-93925600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr1:93916800-93929400	Weak transcription	Brain Germinal Matrix	brain
22	chr1:93916800-93930400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr1:93916800-93932800	Weak transcription	Fetal Kidney	kidney
24	chr1:93917600-93937200	Weak transcription	Fetal Brain Male	brain
25	chr1:93918200-93928800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr1:93919800-93937000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr1:93920000-93927600	Weak transcription	Hela-S3	cervix
28	chr1:93920000-93928200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr1:93920000-93936800	Weak transcription	NH-A	brain
30	chr1:93920000-93943800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr1:93920400-93926000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr1:93920400-93929400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr1:93920400-93936600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr1:93921000-93932400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr1:93921200-93936000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr1:93921200-93936600	Weak transcription	HUVEC	blood vessel
37	chr1:93921200-93937000	Weak transcription	Left Ventricle	heart
38	chr1:93921200-93939800	Weak transcription	Right Ventricle	heart
39	chr1:93922000-93924600	Strong transcription	Fetal Intestine Small	intestine
40	chr1:93922400-93925400	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr1:93922400-93927600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr1:93922600-93924600	ZNF genes & repeats	Fetal Brain Female	brain
43	chr1:93922600-93927600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr1:93922600-93944000	Weak transcription	Gastric	stomach
45	chr1:93923000-93925800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr1:93923200-93926000	Weak transcription	HepG2	liver
47	chr1:93923200-93927200	Weak transcription	Fetal Muscle Leg	muscle
48	chr1:93923200-93928200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr1:93923800-93924800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr1:93923800-93924800	Strong transcription	Fetal Stomach	stomach

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