Variant report

Variant	rs61096581
Chromosome Location	chr1:93881166-93881167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1593513	0.87[ASN][1000 genomes]
rs1593514	0.87[ASN][1000 genomes]
rs1593515	0.87[ASN][1000 genomes]
rs1863500	0.82[ASN][1000 genomes]
rs237424	0.82[ASN][1000 genomes]
rs237426	0.82[ASN][1000 genomes]
rs237427	0.82[ASN][1000 genomes]
rs237428	0.82[ASN][1000 genomes]
rs237429	0.82[ASN][1000 genomes]
rs237430	0.82[ASN][1000 genomes]
rs2449377	0.82[ASN][1000 genomes]
rs2493642	0.82[ASN][1000 genomes]
rs2554841	0.82[ASN][1000 genomes]
rs2624438	0.82[ASN][1000 genomes]
rs2818968	0.82[ASN][1000 genomes]
rs4475764	0.87[ASN][1000 genomes]
rs56657492	1.00[AMR][1000 genomes]
rs57438388	0.82[ASN][1000 genomes]
rs57440609	0.87[ASN][1000 genomes]
rs57453256	0.87[ASN][1000 genomes]
rs58212333	0.82[ASN][1000 genomes]
rs58430978	0.82[ASN][1000 genomes]
rs58591926	0.87[ASN][1000 genomes]
rs59039419	0.82[ASN][1000 genomes]
rs60515224	0.82[ASN][1000 genomes]
rs60717381	0.82[ASN][1000 genomes]
rs61231069	1.00[ASN][1000 genomes]
rs6657187	0.87[ASN][1000 genomes]
rs6701683	1.00[AMR][1000 genomes]
rs72959273	1.00[AMR][1000 genomes]
rs72961357	0.82[ASN][1000 genomes]
rs72961366	0.82[ASN][1000 genomes]
rs72961373	0.82[ASN][1000 genomes]
rs72961379	0.82[ASN][1000 genomes]
rs72961386	0.82[ASN][1000 genomes]
rs72961389	0.82[ASN][1000 genomes]
rs7540960	1.00[AMR][1000 genomes]
rs7547495	0.82[ASN][1000 genomes]
rs7554661	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3375834	chr1:93872980-93904647	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93878200-93882000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:93878800-93881200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:93880200-93881200	Enhancers	HUVEC	blood vessel
4	chr1:93880200-93881800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr1:93880400-93881200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:93880400-93881200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:93880400-93881200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:93880400-93881200	Enhancers	Fetal Kidney	kidney
9	chr1:93880400-93881400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr1:93880400-93881600	Enhancers	Primary hematopoietic stem cells	blood
11	chr1:93880400-93882000	Enhancers	Primary B cells from peripheral blood	blood
12	chr1:93880600-93881400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr1:93880800-93881200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:93880800-93881200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:93881000-93881200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr1:93881000-93881200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr1:93881000-93881200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:93881000-93881200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr1:93881000-93881200	Enhancers	Adipose Nuclei	Adipose
20	chr1:93881000-93881200	Enhancers	Ovary	ovary
21	chr1:93881000-93881400	Enhancers	Aorta	Aorta
22	chr1:93881000-93881800	Enhancers	Primary B cells from cord blood	blood

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