Variant report
| Variant | rs61231069 |
|---|---|
| Chromosome Location | chr1:93887361-93887362 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs1593513 | 0.87[ASN][1000 genomes] |
| rs1593514 | 0.87[ASN][1000 genomes] |
| rs1593515 | 0.87[ASN][1000 genomes] |
| rs1863500 | 0.82[ASN][1000 genomes] |
| rs237424 | 0.82[ASN][1000 genomes] |
| rs237426 | 0.82[ASN][1000 genomes] |
| rs237427 | 0.82[ASN][1000 genomes] |
| rs237428 | 0.82[ASN][1000 genomes] |
| rs237429 | 0.82[ASN][1000 genomes] |
| rs237430 | 0.82[ASN][1000 genomes] |
| rs2449377 | 0.82[ASN][1000 genomes] |
| rs2493642 | 0.82[ASN][1000 genomes] |
| rs2554841 | 0.82[ASN][1000 genomes] |
| rs2624438 | 0.82[ASN][1000 genomes] |
| rs2818968 | 0.82[ASN][1000 genomes] |
| rs4475764 | 0.87[ASN][1000 genomes] |
| rs57438388 | 0.82[ASN][1000 genomes] |
| rs57440609 | 0.85[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs57453256 | 0.87[ASN][1000 genomes] |
| rs58212333 | 0.82[ASN][1000 genomes] |
| rs58430978 | 0.82[ASN][1000 genomes] |
| rs58591926 | 0.87[ASN][1000 genomes] |
| rs59039419 | 0.82[ASN][1000 genomes] |
| rs60515224 | 1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs60717381 | 0.82[ASN][1000 genomes] |
| rs61096581 | 1.00[ASN][1000 genomes] |
| rs6657187 | 0.87[ASN][1000 genomes] |
| rs72961357 | 0.82[ASN][1000 genomes] |
| rs72961366 | 0.82[ASN][1000 genomes] |
| rs72961373 | 0.82[ASN][1000 genomes] |
| rs72961379 | 0.82[ASN][1000 genomes] |
| rs72961386 | 0.82[ASN][1000 genomes] |
| rs72961389 | 0.82[ASN][1000 genomes] |
| rs7547495 | 0.82[ASN][1000 genomes] |
| rs7554661 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv871640 | chr1:93807122-93953469 | Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
| 2 | esv3375834 | chr1:93872980-93904647 | ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:93881400-93891800 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
