Variant report

Variant	rs17110320
Chromosome Location	chr1:94159919-94159920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:94151003..94153408-chr1:94159847..94162420,2	MCF-7	breast:
2	chr1:94159323..94161340-chr1:94172138..94174282,2	MCF-7	breast:
3	chr1:94157790..94160222-chr1:94162469..94164746,2	K562	blood:
4	chr1:94146824..94149615-chr1:94158501..94160523,4	MCF-7	breast:
5	chr1:94159861..94162335-chr14:63646613..63648344,2	MCF-7	breast:
6	chr1:94159426..94161793-chr1:94168321..94171203,3	MCF-7	breast:
7	chr1:94146120..94150945-chr1:94154288..94160235,6	MCF-7	breast:
8	chr1:94157694..94160126-chr1:94167875..94169422,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FNBP1L-3	chr1:94159835-94161080	NONHSAT004543

No data

Variant related genes	Relation type
ENSG00000137936	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10489541	1.00[EUR][1000 genomes]
rs11164954	1.00[EUR][1000 genomes]
rs11800247	1.00[EUR][1000 genomes]
rs11802499	1.00[EUR][1000 genomes]
rs11805042	1.00[EUR][1000 genomes]
rs11806965	1.00[EUR][1000 genomes]
rs17110193	1.00[EUR][1000 genomes]
rs17110312	1.00[EUR][1000 genomes]
rs2221923	1.00[EUR][1000 genomes]
rs236309	1.00[EUR][1000 genomes]
rs35650636	1.00[EUR][1000 genomes]
rs58024738	1.00[EUR][1000 genomes]
rs58126899	1.00[EUR][1000 genomes]
rs58679238	1.00[EUR][1000 genomes]
rs59653321	1.00[EUR][1000 genomes]
rs60179644	1.00[EUR][1000 genomes]
rs60188127	1.00[EUR][1000 genomes]
rs60226009	1.00[EUR][1000 genomes]
rs61372707	1.00[EUR][1000 genomes]
rs6541391	1.00[EUR][1000 genomes]
rs6541392	1.00[EUR][1000 genomes]
rs6661879	1.00[EUR][1000 genomes]
rs6671646	1.00[EUR][1000 genomes]
rs6686775	1.00[EUR][1000 genomes]
rs72963382	1.00[EUR][1000 genomes]
rs72967379	1.00[EUR][1000 genomes]
rs7525976	1.00[EUR][1000 genomes]
rs7526263	1.00[EUR][1000 genomes]
rs7548581	1.00[EUR][1000 genomes]
rs871855	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482370	chr1:94000799-94183692	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv2755338	chr1:94059579-94176079	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94148200-94167200	Weak transcription	Right Atrium	heart
2	chr1:94153800-94171600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:94155600-94171000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:94156400-94161200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:94156400-94162400	Enhancers	Primary B cells from peripheral blood	blood
6	chr1:94156600-94160600	Enhancers	Fetal Muscle Leg	muscle
7	chr1:94156600-94161600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr1:94156600-94162200	Enhancers	Placenta	Placenta
9	chr1:94156800-94160200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:94156800-94161000	Enhancers	HSMMtube	muscle
11	chr1:94156800-94161400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:94156800-94162200	Enhancers	Primary B cells from cord blood	blood
13	chr1:94157000-94160600	Enhancers	Fetal Muscle Trunk	muscle
14	chr1:94157000-94160800	Enhancers	Lung	lung
15	chr1:94157200-94160400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr1:94157200-94165400	Weak transcription	Pancreas	Pancrea
17	chr1:94157400-94160200	Enhancers	HUVEC	blood vessel
18	chr1:94157400-94167600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr1:94157600-94160400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:94157600-94160800	Flanking Active TSS	Hela-S3	cervix
21	chr1:94157600-94161000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr1:94157600-94161200	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr1:94157800-94160600	Flanking Active TSS	NHEK	skin
24	chr1:94158000-94160600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:94158200-94162000	Enhancers	Placenta Amnion	Placenta Amnion
26	chr1:94158200-94162400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr1:94158400-94160600	Enhancers	Aorta	Aorta
28	chr1:94158400-94165200	Weak transcription	Brain Hippocampus Middle	brain
29	chr1:94158400-94166600	Weak transcription	Gastric	stomach
30	chr1:94158400-94168200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr1:94158800-94160200	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr1:94158800-94160400	Flanking Active TSS	HMEC	breast
33	chr1:94158800-94160400	Enhancers	NHLF	lung
34	chr1:94158800-94160600	Enhancers	Right Ventricle	heart
35	chr1:94158800-94160600	Weak transcription	Stomach Mucosa	stomach
36	chr1:94158800-94161000	Weak transcription	Adipose Nuclei	Adipose
37	chr1:94158800-94162600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr1:94158800-94166400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr1:94159000-94160000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr1:94159000-94160600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr1:94159000-94160800	Enhancers	Osteobl	bone
42	chr1:94159000-94161400	Weak transcription	Duodenum Mucosa	Duodenum
43	chr1:94159000-94161800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr1:94159000-94173600	Weak transcription	Fetal Intestine Small	intestine
45	chr1:94159200-94160000	Flanking Active TSS	HSMM	muscle
46	chr1:94159200-94160200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr1:94159200-94160800	Weak transcription	Thymus	Thymus
48	chr1:94159200-94161600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr1:94159400-94160400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr1:94159400-94160400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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