Variant report

Variant	rs1330858
Chromosome Location	chr1:94639337-94639338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94634875..94637097-chr1:94638561..94641795,3	K562	blood:
2	chr1:94635193..94637097-chr1:94638561..94640426,2	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10782981	0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10874845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11800866	1.00[EUR][1000 genomes]
rs11801203	1.00[EUR][1000 genomes]
rs11801251	1.00[EUR][1000 genomes]
rs11802178	1.00[EUR][1000 genomes]
rs11802887	1.00[EUR][1000 genomes]
rs11803374	1.00[EUR][1000 genomes]
rs11803749	1.00[EUR][1000 genomes]
rs11805161	1.00[EUR][1000 genomes]
rs11806223	1.00[EUR][1000 genomes]
rs12069536	1.00[EUR][1000 genomes]
rs1318396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1330856	1.00[EUR][1000 genomes]
rs1330859	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1330860	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1337856	1.00[EUR][1000 genomes]
rs1337857	0.85[MKK][hapmap];1.00[EUR][1000 genomes]
rs1361124	1.00[EUR][1000 genomes]
rs1411697	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1411703	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs1541097	0.82[YRI][hapmap]
rs1571645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1577920	1.00[EUR][1000 genomes]
rs1616972	1.00[EUR][1000 genomes]
rs1617363	1.00[EUR][1000 genomes]
rs1617719	1.00[EUR][1000 genomes]
rs1687921	1.00[EUR][1000 genomes]
rs1687922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687925	1.00[EUR][1000 genomes]
rs1687926	1.00[EUR][1000 genomes]
rs1687929	1.00[EUR][1000 genomes]
rs1687934	1.00[EUR][1000 genomes]
rs1687938	1.00[EUR][1000 genomes]
rs1687939	1.00[EUR][1000 genomes]
rs1687942	1.00[EUR][1000 genomes]
rs1687945	1.00[EUR][1000 genomes]
rs1687953	1.00[EUR][1000 genomes]
rs1687955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687958	1.00[EUR][1000 genomes]
rs1687959	1.00[EUR][1000 genomes]
rs1687960	1.00[EUR][1000 genomes]
rs1687967	1.00[EUR][1000 genomes]
rs1687969	1.00[EUR][1000 genomes]
rs17111347	1.00[EUR][1000 genomes]
rs1756247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756256	1.00[EUR][1000 genomes]
rs1756258	1.00[EUR][1000 genomes]
rs1756263	1.00[EUR][1000 genomes]
rs1756264	1.00[EUR][1000 genomes]
rs1765616	1.00[EUR][1000 genomes]
rs1765624	1.00[EUR][1000 genomes]
rs1765625	1.00[EUR][1000 genomes]
rs1765631	1.00[EUR][1000 genomes]
rs1765633	1.00[EUR][1000 genomes]
rs1765634	1.00[EUR][1000 genomes]
rs1765638	1.00[EUR][1000 genomes]
rs1765639	1.00[EUR][1000 genomes]
rs1765642	1.00[EUR][1000 genomes]
rs2021992	0.87[LWK][hapmap]
rs2021993	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs2094824	0.85[MKK][hapmap];1.00[EUR][1000 genomes]
rs2150267	1.00[YRI][hapmap]
rs2391471	1.00[EUR][1000 genomes]
rs2483792	1.00[EUR][1000 genomes]
rs2774921	1.00[EUR][1000 genomes]
rs28494821	1.00[EUR][1000 genomes]
rs2893296	1.00[EUR][1000 genomes]
rs4847297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59778098	1.00[EUR][1000 genomes]
rs6673287	1.00[EUR][1000 genomes]
rs6684237	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7417304	1.00[EUR][1000 genomes]
rs7521107	1.00[EUR][1000 genomes]
rs7547705	0.80[YRI][hapmap]
rs7548077	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs9432270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9432441	1.00[EUR][1000 genomes]
rs9432688	1.00[EUR][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94626800-94639400	Weak transcription	Psoas Muscle	Psoas
2	chr1:94626800-94639400	Weak transcription	NHEK	skin
3	chr1:94626800-94643400	Weak transcription	Fetal Heart	heart
4	chr1:94627000-94639400	Weak transcription	HSMMtube	muscle
5	chr1:94629800-94639400	Weak transcription	Spleen	Spleen
6	chr1:94630800-94639400	Weak transcription	Gastric	stomach
7	chr1:94631400-94639400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr1:94631800-94639800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:94631800-94646600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr1:94632200-94639400	Weak transcription	Pancreas	Pancrea
11	chr1:94633200-94639400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:94633400-94639400	Weak transcription	Left Ventricle	heart
13	chr1:94634000-94639400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr1:94634200-94643000	Strong transcription	HUVEC	blood vessel
15	chr1:94634200-94656600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr1:94634200-94658400	Strong transcription	HSMM	muscle
17	chr1:94634200-94660800	Strong transcription	NH-A	brain
18	chr1:94634200-94661800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:94634200-94675200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr1:94634400-94639400	Weak transcription	A549	lung
21	chr1:94634400-94646400	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr1:94634400-94646600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr1:94634400-94660400	Strong transcription	NHDF-Ad	bronchial
24	chr1:94634600-94639400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr1:94634600-94639400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr1:94634600-94662000	Strong transcription	HMEC	breast
27	chr1:94634800-94644400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr1:94634800-94645000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr1:94635000-94646800	Weak transcription	Esophagus	oesophagus
30	chr1:94635000-94658000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:94635600-94639400	Weak transcription	Fetal Stomach	stomach
32	chr1:94635800-94646200	Strong transcription	Osteobl	bone
33	chr1:94636000-94639400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr1:94636000-94658400	Strong transcription	Liver	Liver
35	chr1:94636200-94641000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr1:94636200-94644000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr1:94636200-94673400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr1:94636600-94641200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr1:94636600-94647400	Strong transcription	Adipose Nuclei	Adipose
40	chr1:94636800-94644200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr1:94636800-94645000	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr1:94637000-94639400	Weak transcription	Fetal Kidney	kidney
43	chr1:94637200-94639400	Weak transcription	Aorta	Aorta
44	chr1:94637200-94639400	Weak transcription	Lung	lung
45	chr1:94637400-94639400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr1:94637400-94639400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr1:94637400-94639400	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr1:94637400-94639400	Weak transcription	Right Ventricle	heart
49	chr1:94637600-94650800	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr1:94637800-94639400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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