The 2.0 version of rSNPBase

Variant report

Variant rs1687945
Chromosome Location chr2:149463502-149463503
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:149429200-149477000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
2 chr2:149432600-149469800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
3 chr2:149432600-149477600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr2:149436200-149464600 Weak transcription Pancreas Pancrea
5 chr2:149436600-149477000 Weak transcription Lung lung
6 chr2:149442400-149465800 Weak transcription Skeletal Muscle Female skeletal muscle
7 chr2:149447200-149478000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr2:149451600-149464800 Weak transcription Gastric stomach
9 chr2:149452000-149474800 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr2:149453200-149474000 Weak transcription NHEK skin
11 chr2:149453800-149465600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
12 chr2:149453800-149465600 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr2:149453800-149466000 Weak transcription Duodenum Mucosa Duodenum
14 chr2:149453800-149477400 Weak transcription Placenta Placenta
15 chr2:149456600-149464000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr2:149457600-149477000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr2:149457600-149477200 Weak transcription Thymus Thymus
18 chr2:149458400-149464400 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr2:149459000-149466600 Weak transcription Adipose Nuclei Adipose
20 chr2:149459000-149473000 Weak transcription Primary T helper naive cells from peripheral blood blood
21 chr2:149459000-149477000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr2:149459200-149465200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
23 chr2:149459200-149468400 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr2:149459200-149477600 Weak transcription HSMM muscle
25 chr2:149459400-149469200 Weak transcription H1 Cell Line embryonic stem cell
26 chr2:149459400-149477200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
27 chr2:149459400-149477400 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr2:149459600-149463600 Weak transcription Brain Anterior Caudate brain
29 chr2:149459600-149471800 Weak transcription Primary B cells from peripheral blood blood
30 chr2:149459600-149477600 Weak transcription Brain Inferior Temporal Lobe brain
31 chr2:149460000-149464200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr2:149460400-149464000 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
33 chr2:149460400-149473600 Weak transcription Primary T killer naive cells fromperipheralblood blood
34 chr2:149460600-149470200 Weak transcription Primary T killer memory cells from peripheral blood blood
35 chr2:149461000-149463600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr2:149461200-149463800 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
37 chr2:149461400-149463600 Strong transcription Primary T cells fromperipheralblood blood
38 chr2:149461400-149486000 Weak transcription Aorta Aorta
39 chr2:149461600-149473400 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr2:149461800-149463800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr2:149461800-149477200 Weak transcription Fetal Kidney kidney
42 chr2:149462000-149474800 Weak transcription Primary T cells from cord blood blood
43 chr2:149462000-149477200 Weak transcription Ovary ovary
44 chr2:149462000-149477800 Weak transcription Stomach Smooth Muscle stomach
45 chr2:149462400-149464600 Weak transcription Fetal Muscle Trunk muscle
46 chr2:149462400-149473000 Weak transcription K562 blood
47 chr2:149462400-149474800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
48 chr2:149462400-149474800 Weak transcription Fetal Lung lung
49 chr2:149462600-149464600 Weak transcription Fetal Intestine Large intestine
50 chr2:149462600-149479800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood

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Last update: Aug 31, 2015