Variant report

Variant	rs11810728
Chromosome Location	chr1:94818693-94818694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94815904..94818865-chr1:94882409..94884821,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117528	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11801203	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11801251	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1330856	1.00[AMR][1000 genomes]
rs1337856	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1337857	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1361124	0.83[AFR][1000 genomes]
rs1577920	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1616972	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1617363	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1617719	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1687925	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1687926	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1687929	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1687934	1.00[AMR][1000 genomes]
rs1687938	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1687939	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1687942	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1687945	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1687953	0.87[AFR][1000 genomes]
rs1687959	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1687960	0.83[AFR][1000 genomes]
rs1687969	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17111347	1.00[AMR][1000 genomes]
rs1756258	1.00[AMR][1000 genomes]
rs1756264	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1765616	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1765624	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1765625	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1765631	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1765633	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1765634	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1765637	0.89[AFR][1000 genomes]
rs1765638	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1765639	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2094824	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2391471	1.00[AMR][1000 genomes]
rs2893296	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94814400-94821400	Enhancers	Fetal Thymus	thymus
2	chr1:94814600-94819000	Enhancers	Thymus	Thymus
3	chr1:94816800-94820400	Weak transcription	Liver	Liver
4	chr1:94818400-94819600	Enhancers	HepG2	liver

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