Variant report

Variant	rs696646
Chromosome Location	chr10:92001719-92001720
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1070513	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1070514	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1071485	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10785948	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10785949	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1326168	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1410902	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1540998	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1575852	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1575853	0.82[EUR][1000 genomes]
rs2249774	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2249781	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2249784	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2250150	0.82[EUR][1000 genomes]
rs2250351	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2478483	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2478484	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2478485	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2478486	0.90[EUR][1000 genomes]
rs2480267	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2480268	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2480269	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2766630	0.81[EUR][1000 genomes]
rs2766633	0.97[EUR][1000 genomes]
rs2766634	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs699190	0.92[EUR][1000 genomes]
rs699191	0.98[EUR][1000 genomes]
rs699192	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs699194	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs699195	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs699196	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs699197	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs699198	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs699199	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs699200	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs699202	0.90[EUR][1000 genomes]
rs699203	0.81[EUR][1000 genomes]
rs699204	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs699205	0.96[EUR][1000 genomes]
rs699206	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs699207	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs699211	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs699214	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs699215	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043571	chr10:91568555-92036154	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv551874	chr10:91570211-92036154	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv949678	chr10:91589048-92016474	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv895883	chr10:91610601-92195828	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1039731	chr10:91645718-92198264	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv540743	chr10:91645718-92198264	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv467430	chr10:91681344-92297943	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv551875	chr10:91681344-92297943	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	esv3375393	chr10:91880933-92243227	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	esv2422237	chr10:91940542-92547558	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	esv3530825	chr10:91998401-92002130	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
12	esv1798083	chr10:91998416-92002491	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
13	esv1807940	chr10:91998416-92002491	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
14	esv1814546	chr10:91998416-92002491	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
15	esv1847829	chr10:91998416-92002491	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
16	esv1850027	chr10:91998416-92002491	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
17	nsv442202	chr10:91998416-92002491	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
18	esv3530802	chr10:91998422-92002079	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
19	esv3530791	chr10:91998458-92002096	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
20	esv13900	chr10:91998471-92002033	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
21	esv3318385	chr10:91998472-92004470	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
22	esv3318396	chr10:91998472-92004470	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
23	esv3530780	chr10:91998474-92002058	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
24	esv3530814	chr10:91998517-92002041	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
25	esv1843483	chr10:91998521-92001825	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
26	esv1848190	chr10:91998521-92001825	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
27	esv1810022	chr10:91998521-92002112	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
28	esv1810439	chr10:91998521-92002112	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
29	esv1804437	chr10:91998521-92007112	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
30	nsv825507	chr10:91998522-92001882	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
31	esv3530836	chr10:91998536-92002035	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
32	nsv514584	chr10:91998564-92001740	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
33	esv1811193	chr10:91998574-92001825	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
34	esv1843780	chr10:91998574-92001825	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
35	esv1849185	chr10:91998574-92001825	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
36	esv1849340	chr10:91999112-92001825	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91992600-92005000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:92001400-92001800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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