Variant report

Variant	rs6969256
Chromosome Location	chr7:3662201-3662202
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:3657416..3659816-chr7:3660917..3663637,2	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1019914	0.84[ASN][1000 genomes]
rs10215438	0.80[JPT][hapmap]
rs10225865	0.95[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs10233162	0.81[CHB][hapmap]
rs10235750	0.87[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10238142	0.81[ASN][1000 genomes]
rs10256761	0.94[ASN][1000 genomes]
rs10258910	0.81[CHB][hapmap]
rs10263338	0.81[CHB][hapmap];0.86[CHD][hapmap]
rs10276626	0.81[CHB][hapmap]
rs10951254	0.85[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs10951264	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11767639	0.90[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap];0.86[ASN][1000 genomes]
rs11768433	0.80[ASN][1000 genomes]
rs11976780	0.81[CHB][hapmap]
rs1202219	0.80[AMR][1000 genomes]
rs1202221	0.83[AMR][1000 genomes]
rs1202237	0.80[MEX][hapmap]
rs12055947	0.85[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs13227634	0.86[ASN][1000 genomes]
rs1548209	0.84[JPT][hapmap]
rs17133605	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17133624	0.81[CHB][hapmap]
rs17133636	0.81[CHB][hapmap]
rs17133677	0.81[CHB][hapmap]
rs1864842	0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.87[ASN][1000 genomes]
rs1972765	0.85[MEX][hapmap]
rs1978700	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2217608	0.81[LWK][hapmap];0.90[MEX][hapmap]
rs2341578	0.82[JPT][hapmap]
rs2341583	0.92[ASN][1000 genomes]
rs2341587	0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.94[ASN][1000 genomes]
rs2614956	0.85[MEX][hapmap]
rs2614966	0.84[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs2614969	0.83[ASN][1000 genomes]
rs2705598	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs2705606	0.85[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs2880086	0.86[ASN][1000 genomes]
rs2880087	0.84[CEU][hapmap]
rs3817615	0.81[CHB][hapmap];0.88[CHD][hapmap]
rs4257931	0.94[ASN][1000 genomes]
rs4476896	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4722980	0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4722983	0.80[ASN][1000 genomes]
rs56090810	0.93[ASN][1000 genomes]
rs56105954	0.92[ASN][1000 genomes]
rs60514739	0.94[ASN][1000 genomes]
rs6462200	0.81[CHB][hapmap];0.90[CHD][hapmap]
rs6462213	0.82[JPT][hapmap];0.86[MEX][hapmap]
rs6462225	0.81[CHB][hapmap];0.81[CHD][hapmap]
rs6462232	0.81[CHB][hapmap]
rs6462235	0.81[CHB][hapmap]
rs6462241	0.81[CHB][hapmap]
rs6462243	0.81[CHB][hapmap]
rs6462245	0.81[CHB][hapmap]
rs6959706	0.90[CHB][hapmap]
rs6961396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6964347	0.81[CHB][hapmap];0.86[CHD][hapmap]
rs7778346	0.81[CHB][hapmap]
rs7782236	0.84[LWK][hapmap];0.80[MEX][hapmap];0.89[YRI][hapmap]
rs7786418	0.81[CHB][hapmap]
rs7794763	0.81[JPT][hapmap]
rs7797872	0.83[ASN][1000 genomes]
rs7807210	0.81[CHB][hapmap];0.88[CHD][hapmap]
rs7808135	0.81[CHB][hapmap]
rs7810317	0.80[CEU][hapmap];0.87[YRI][hapmap]
rs919709	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs957360	0.86[CHB][hapmap];0.91[CHD][hapmap]
rs959894	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv916071	chr7:3423207-3697428	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv830888	chr7:3577214-3776276	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv1792280	chr7:3592290-3668229	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv948390	chr7:3609821-3734421	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1033415	chr7:3616095-3753563	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv538680	chr7:3616095-3753563	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1016930	chr7:3627295-3705057	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv530553	chr7:3629504-3736851	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1016270	chr7:3650882-3753563	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv538681	chr7:3650882-3753563	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv605928	chr7:3654580-3665040	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3649600-3673400	Weak transcription	Pancreas	Pancrea
2	chr7:3654400-3667600	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:3656800-3668800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:3657400-3665000	Weak transcription	Spleen	Spleen
5	chr7:3657400-3669800	Weak transcription	Fetal Stomach	stomach
6	chr7:3659200-3684400	Weak transcription	Right Ventricle	heart
7	chr7:3660800-3663400	Weak transcription	Aorta	Aorta
8	chr7:3660800-3666200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:3660800-3666600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:3661400-3674600	Weak transcription	Muscle Satellite Cultured Cells	--

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