Variant report

Variant	rs6969943
Chromosome Location	chr7:122325162-122325163
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55966925	0.89[AFR][1000 genomes]
rs56029822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6651101	1.00[YRI][hapmap]
rs73719742	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73719746	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv532181	chr7:122291571-122684719	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122317600-122326600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:122317600-122327000	Weak transcription	Fetal Stomach	stomach
3	chr7:122318800-122325200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:122320400-122325200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:122320400-122325200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:122320400-122325200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:122320400-122325200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr7:122320400-122325200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:122320400-122326400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:122320800-122329400	Weak transcription	Fetal Intestine Small	intestine
11	chr7:122322400-122329200	Weak transcription	Gastric	stomach
12	chr7:122322600-122328400	Weak transcription	HepG2	liver
13	chr7:122323200-122325200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:122323200-122328600	Weak transcription	Pancreas	Pancrea
15	chr7:122324000-122325200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:122324000-122325200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:122324000-122326600	Weak transcription	Left Ventricle	heart
18	chr7:122324000-122331600	Weak transcription	Lung	lung
19	chr7:122324000-122336000	Weak transcription	Right Atrium	heart
20	chr7:122324200-122336000	Weak transcription	Fetal Lung	lung
21	chr7:122324800-122325600	Enhancers	Stomach Mucosa	stomach
22	chr7:122325000-122325400	Enhancers	Liver	Liver

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