Variant report

Variant	rs73719746
Chromosome Location	chr7:122336642-122336643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55966925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56029822	0.89[AFR][1000 genomes]
rs6969943	0.89[AFR][1000 genomes]
rs73220282	1.00[EUR][1000 genomes]
rs73719740	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73719742	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv532181	chr7:122291571-122684719	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv817238	chr7:122325864-122371594	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122329600-122343400	Weak transcription	Ovary	ovary
2	chr7:122330000-122343000	Weak transcription	Spleen	Spleen
3	chr7:122330000-122347000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:122332800-122342200	Weak transcription	Left Ventricle	heart
5	chr7:122333000-122350400	Weak transcription	Gastric	stomach
6	chr7:122335000-122336800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:122335600-122336800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:122336000-122336800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr7:122336400-122347600	Weak transcription	Fetal Lung	lung
10	chr7:122336600-122342000	Weak transcription	Pancreas	Pancrea
11	chr7:122336600-122347000	Weak transcription	HepG2	liver
12	chr7:122336600-122359000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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