Variant report

Variant	rs697001
Chromosome Location	chr1:211910174-211910175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211909223..211910773-chr1:212004140..212006713,2	K562	blood:
2	chr1:211872037..211874391-chr1:211908147..211910585,2	MCF-7	breast:
3	chr1:211908649..211910536-chr1:211924559..211927558,2	K562	blood:

Variant related genes	Relation type
ENSG00000229258	Chromatin interaction

rs_ID	r²[population]
rs6662642	1.00[JPT][hapmap]

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211879200-211913600	Weak transcription	Right Atrium	heart
2	chr1:211904600-211912600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:211904600-211913800	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr1:211904800-211913400	Enhancers	Brain Substantia Nigra	brain
5	chr1:211905400-211910600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr1:211905400-211910800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:211905600-211910400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:211905800-211910400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:211906800-211912400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:211907000-211920800	Weak transcription	Aorta	Aorta
11	chr1:211907800-211910800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr1:211907800-211910800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr1:211907800-211914400	Enhancers	Brain Anterior Caudate	brain
14	chr1:211908000-211913200	Enhancers	Brain Angular Gyrus	brain
15	chr1:211908200-211911200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr1:211908400-211910200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:211908400-211910800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:211908400-211912800	Enhancers	HMEC	breast
19	chr1:211908400-211913400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:211908600-211910600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:211908800-211910800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr1:211908800-211910800	Enhancers	Placenta Amnion	Placenta Amnion
23	chr1:211908800-211920800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr1:211908800-211920800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr1:211909200-211910200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr1:211909200-211910400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:211909200-211910600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr1:211909200-211910800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr1:211909200-211911600	Weak transcription	Lung	lung
30	chr1:211909200-211920200	Weak transcription	Fetal Intestine Large	intestine
31	chr1:211909200-211922200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr1:211909400-211910400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr1:211909400-211911400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr1:211909400-211920800	Weak transcription	Pancreas	Pancrea
35	chr1:211909400-211921000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr1:211909400-211921600	Weak transcription	Fetal Intestine Small	intestine
37	chr1:211909400-211939200	Weak transcription	Ovary	ovary
38	chr1:211909600-211910200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr1:211909600-211911200	Enhancers	Fetal Muscle Leg	muscle
40	chr1:211909600-211921400	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr1:211909600-211922000	Weak transcription	Placenta	Placenta
42	chr1:211909600-211922400	Weak transcription	HSMM	muscle
43	chr1:211909600-211923600	Weak transcription	NHDF-Ad	bronchial
44	chr1:211909600-211939400	Weak transcription	Esophagus	oesophagus
45	chr1:211909800-211910200	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr1:211909800-211911000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
47	chr1:211909800-211912400	Weak transcription	K562	blood
48	chr1:211909800-211912800	Enhancers	A549	lung
49	chr1:211909800-211915000	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr1:211909800-211919200	Enhancers	Brain Hippocampus Middle	brain

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