Variant report

Variant	rs6662642
Chromosome Location	chr1:211907231-211907232
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211891341..211893035-chr1:211906287..211908426,2	K562	blood:
2	chr1:211898917..211901292-chr1:211906344..211908451,2	K562	blood:
3	chr1:211903282..211905455-chr1:211905843..211907971,2	MCF-7	breast:
4	chr1:211898023..211900706-chr1:211903534..211907505,4	K562	blood:

Variant related genes	Relation type
ENSG00000226868	Chromatin interaction

rs_ID	r²[population]
rs10449306	1.00[ASN][1000 genomes]
rs12561861	1.00[CHD][hapmap]
rs28748135	1.00[ASN][1000 genomes]
rs28885134	1.00[ASN][1000 genomes]
rs4951551	1.00[ASN][1000 genomes]
rs56794231	1.00[ASN][1000 genomes]
rs56903779	1.00[ASN][1000 genomes]
rs57370359	1.00[ASN][1000 genomes]
rs57554409	1.00[ASN][1000 genomes]
rs59499736	1.00[ASN][1000 genomes]
rs60200148	1.00[ASN][1000 genomes]
rs61598472	1.00[ASN][1000 genomes]
rs6664087	1.00[ASN][1000 genomes]
rs6667353	0.91[MKK][hapmap]
rs697001	1.00[JPT][hapmap]
rs73091003	1.00[ASN][1000 genomes]
rs7524573	1.00[ASN][1000 genomes]
rs7550801	1.00[ASN][1000 genomes]

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211879200-211913600	Weak transcription	Right Atrium	heart
2	chr1:211896400-211909000	Weak transcription	Fetal Intestine Small	intestine
3	chr1:211900200-211908400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:211903800-211908600	Weak transcription	Lung	lung
5	chr1:211904600-211912600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:211904600-211913800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr1:211904800-211913400	Enhancers	Brain Substantia Nigra	brain
8	chr1:211905000-211908400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:211905200-211907800	Weak transcription	Hela-S3	cervix
10	chr1:211905400-211907600	Weak transcription	K562	blood
11	chr1:211905400-211908400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:211905400-211910600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr1:211905400-211910800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:211905600-211908200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:211905600-211908600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:211905600-211910400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:211905800-211910400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:211906000-211908400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:211906400-211907600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr1:211906400-211907800	Weak transcription	Brain Anterior Caudate	brain
21	chr1:211906400-211908600	Weak transcription	HSMMtube	muscle
22	chr1:211906800-211909200	Enhancers	Brain Hippocampus Middle	brain
23	chr1:211906800-211912400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr1:211907000-211907600	Weak transcription	Pancreas	Pancrea
25	chr1:211907000-211908000	Weak transcription	Brain Angular Gyrus	brain
26	chr1:211907000-211920800	Weak transcription	Aorta	Aorta
27	chr1:211907200-211907600	Enhancers	A549	lung
28	chr1:211907200-211908000	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr1:211907200-211909200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr1:211907200-211909800	Enhancers	Stomach Mucosa	stomach

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