Variant report

Variant	rs6664087
Chromosome Location	chr1:212094669-212094670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:212092565..212095366-chr1:212097974..212099950,2	MCF-7	breast:
2	chr1:212085059..212088251-chr1:212089399..212094888,5	K562	blood:
3	chr1:212002514..212004215-chr1:212094353..212097202,2	K562	blood:

Variant related genes	Relation type
ENSG00000123684	Chromatin interaction
ENSG00000229258	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10449306	1.00[ASN][1000 genomes]
rs10494948	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12402547	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17699616	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28748135	1.00[ASN][1000 genomes]
rs28885134	1.00[ASN][1000 genomes]
rs4474321	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4951551	1.00[ASN][1000 genomes]
rs56794231	1.00[ASN][1000 genomes]
rs56903779	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57370359	1.00[ASN][1000 genomes]
rs57554409	1.00[ASN][1000 genomes]
rs59499736	1.00[ASN][1000 genomes]
rs60200148	1.00[ASN][1000 genomes]
rs61598472	1.00[ASN][1000 genomes]
rs61828512	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61828513	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61828514	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6662642	1.00[ASN][1000 genomes]
rs73091003	1.00[ASN][1000 genomes]
rs7524573	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7550801	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212084800-212113000	Weak transcription	Brain Anterior Caudate	brain
2	chr1:212085400-212101800	Weak transcription	Colonic Mucosa	Colon
3	chr1:212088000-212099200	Enhancers	Fetal Intestine Large	intestine
4	chr1:212088600-212099200	Enhancers	Fetal Intestine Small	intestine
5	chr1:212090600-212094800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr1:212090800-212095400	Enhancers	Adipose Nuclei	Adipose
7	chr1:212091000-212102200	Weak transcription	Esophagus	oesophagus
8	chr1:212092000-212096400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:212092000-212096600	Weak transcription	HMEC	breast
10	chr1:212093000-212098400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:212093600-212095400	Enhancers	Liver	Liver
12	chr1:212093800-212098200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr1:212093800-212101800	Weak transcription	Gastric	stomach
14	chr1:212094000-212095400	Enhancers	Right Atrium	heart
15	chr1:212094200-212103200	Weak transcription	Small Intestine	intestine
16	chr1:212094400-212095600	Enhancers	A549	lung
17	chr1:212094400-212096200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr1:212094400-212098000	Weak transcription	Fetal Muscle Leg	muscle
19	chr1:212094400-212098200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr1:212094400-212101400	Weak transcription	Stomach Mucosa	stomach
21	chr1:212094400-212102200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:212094600-212096200	Enhancers	HepG2	liver
23	chr1:212094600-212098400	Weak transcription	Hela-S3	cervix

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