Variant report

Variant	rs4474321
Chromosome Location	chr1:212075265-212075266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10494948	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12402547	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17699616	0.84[EUR][1000 genomes]
rs61828496	0.90[EUR][1000 genomes]
rs61828512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61828513	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61828514	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6664087	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7524573	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212074400-212078400	Enhancers	Fetal Intestine Small	intestine
2	chr1:212074400-212078800	Enhancers	Fetal Intestine Large	intestine
3	chr1:212074600-212076200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:212074600-212077200	ZNF genes & repeats	GM12878-XiMat	blood
5	chr1:212074800-212076200	Enhancers	Esophagus	oesophagus
6	chr1:212075000-212075600	Weak transcription	Colonic Mucosa	Colon
7	chr1:212075200-212075400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:212075200-212075800	Enhancers	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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