Variant report

Variant	rs12402547
Chromosome Location	chr1:212093230-212093231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:212092565..212095366-chr1:212097974..212099950,2	MCF-7	breast:
2	chr1:212085059..212088251-chr1:212089399..212094888,5	K562	blood:
3	chr1:212088917..212091243-chr1:212091462..212093769,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10494948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12402869	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17656620	1.00[AFR][1000 genomes]
rs17699616	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17699706	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4474321	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61828512	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61828513	0.89[EUR][1000 genomes]
rs61828514	0.89[EUR][1000 genomes]
rs6664087	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7524573	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212082800-212093400	Weak transcription	Right Atrium	heart
2	chr1:212084800-212113000	Weak transcription	Brain Anterior Caudate	brain
3	chr1:212085400-212101800	Weak transcription	Colonic Mucosa	Colon
4	chr1:212088000-212099200	Enhancers	Fetal Intestine Large	intestine
5	chr1:212088600-212099200	Enhancers	Fetal Intestine Small	intestine
6	chr1:212089800-212093600	Enhancers	HepG2	liver
7	chr1:212089800-212093800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:212090000-212093600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr1:212090200-212094600	Enhancers	Hela-S3	cervix
10	chr1:212090400-212094600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:212090600-212093800	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr1:212090600-212094400	Enhancers	Osteobl	bone
13	chr1:212090600-212094600	Enhancers	Duodenum Mucosa	Duodenum
14	chr1:212090600-212094800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr1:212090800-212093800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:212090800-212094400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr1:212090800-212094400	Enhancers	Pancreas	Pancrea
18	chr1:212090800-212094400	Enhancers	Stomach Mucosa	stomach
19	chr1:212090800-212094400	Enhancers	NHLF	lung
20	chr1:212090800-212094600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:212090800-212095400	Enhancers	Adipose Nuclei	Adipose
22	chr1:212091000-212094600	Enhancers	NHDF-Ad	bronchial
23	chr1:212091000-212102200	Weak transcription	Esophagus	oesophagus
24	chr1:212091600-212093600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr1:212092000-212093400	Weak transcription	HUVEC	blood vessel
26	chr1:212092000-212093600	Weak transcription	HSMMtube	muscle
27	chr1:212092000-212096400	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr1:212092000-212096600	Weak transcription	HMEC	breast
29	chr1:212092200-212093400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr1:212092200-212093400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr1:212092200-212093400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr1:212092200-212093600	Weak transcription	Small Intestine	intestine
33	chr1:212092200-212094200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr1:212092600-212093400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr1:212092600-212094400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr1:212092800-212093400	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr1:212092800-212093600	Weak transcription	NH-A	brain
38	chr1:212093000-212093400	Enhancers	A549	lung
39	chr1:212093000-212098400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr1:212093200-212093600	Flanking Active TSS	Liver	Liver

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