Variant report

Variant	rs57554409
Chromosome Location	chr1:212060296-212060297
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10449306	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10494945	0.83[AMR][1000 genomes]
rs10494946	0.83[AMR][1000 genomes]
rs17018161	0.83[AMR][1000 genomes]
rs17018191	0.83[AMR][1000 genomes]
rs17042028	0.83[AMR][1000 genomes]
rs28748135	1.00[ASN][1000 genomes]
rs28885134	1.00[ASN][1000 genomes]
rs4951551	1.00[ASN][1000 genomes]
rs56794231	1.00[ASN][1000 genomes]
rs56903779	1.00[ASN][1000 genomes]
rs56945865	0.83[AMR][1000 genomes]
rs57370359	1.00[ASN][1000 genomes]
rs59499736	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60083191	0.83[AMR][1000 genomes]
rs60200148	1.00[ASN][1000 genomes]
rs61511331	0.83[AMR][1000 genomes]
rs61598472	1.00[ASN][1000 genomes]
rs6662642	1.00[ASN][1000 genomes]
rs6664087	1.00[ASN][1000 genomes]
rs73091003	1.00[ASN][1000 genomes]
rs73091010	0.83[AMR][1000 genomes]
rs73091020	0.83[AMR][1000 genomes]
rs73091021	0.83[AMR][1000 genomes]
rs73091023	0.83[AMR][1000 genomes]
rs73091029	0.83[AMR][1000 genomes]
rs73091035	0.83[AMR][1000 genomes]
rs7524573	1.00[ASN][1000 genomes]
rs7550801	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212058400-212061800	Enhancers	Liver	Liver
2	chr1:212059200-212061000	Enhancers	Fetal Intestine Large	intestine
3	chr1:212059200-212061800	Enhancers	Adipose Nuclei	Adipose
4	chr1:212059400-212060400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:212059400-212061800	Enhancers	GM12878-XiMat	blood
6	chr1:212059600-212061000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:212059600-212061200	Weak transcription	Pancreas	Pancrea
8	chr1:212059800-212061000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:212059800-212062000	Enhancers	HepG2	liver
10	chr1:212060000-212061200	Weak transcription	Fetal Intestine Small	intestine
11	chr1:212060000-212062600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr1:212060000-212068600	Weak transcription	A549	lung
13	chr1:212060200-212062600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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