Variant report

Variant	rs17018161
Chromosome Location	chr1:212080347-212080348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10494945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10494946	1.00[AMR][1000 genomes]
rs1343736	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17018191	1.00[AMR][1000 genomes]
rs17042028	1.00[AMR][1000 genomes]
rs56945865	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57554409	0.83[AMR][1000 genomes]
rs60083191	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61511331	1.00[AMR][1000 genomes]
rs73091010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091020	1.00[AMR][1000 genomes]
rs73091021	1.00[AMR][1000 genomes]
rs73091023	1.00[AMR][1000 genomes]
rs73091026	0.83[AMR][1000 genomes]
rs73091029	1.00[AMR][1000 genomes]
rs73091035	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
2	esv3527308	chr1:212079479-212082377	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
3	esv3452684	chr1:212080132-212081517	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	esv3527306	chr1:212080249-212081358	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	n/a
5	esv3452685	chr1:212080253-212081356	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	n/a
6	esv3527309	chr1:212080253-212081356	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212076200-212080800	Weak transcription	Esophagus	oesophagus
2	chr1:212076200-212083600	Weak transcription	Pancreas	Pancrea
3	chr1:212077200-212082600	Weak transcription	Colonic Mucosa	Colon
4	chr1:212077400-212082400	Weak transcription	Adipose Nuclei	Adipose
5	chr1:212078000-212082400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr1:212078000-212082400	Weak transcription	HepG2	liver
7	chr1:212078400-212081800	Weak transcription	Liver	Liver
8	chr1:212078800-212080400	Weak transcription	Fetal Intestine Large	intestine
9	chr1:212078800-212080800	Weak transcription	Fetal Intestine Small	intestine
10	chr1:212079600-212087400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:212080000-212081000	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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