Variant report

Variant	rs56945865
Chromosome Location	chr1:212060123-212060124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10494945	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10494946	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1343736	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17018161	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17018191	1.00[AMR][1000 genomes]
rs17042028	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57554409	0.83[AMR][1000 genomes]
rs60083191	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61511331	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091010	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091020	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091021	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091023	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091026	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73091029	1.00[AMR][1000 genomes]
rs73091035	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212058400-212061800	Enhancers	Liver	Liver
2	chr1:212059200-212060200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:212059200-212061000	Enhancers	Fetal Intestine Large	intestine
4	chr1:212059200-212061800	Enhancers	Adipose Nuclei	Adipose
5	chr1:212059400-212060400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:212059400-212061800	Enhancers	GM12878-XiMat	blood
7	chr1:212059600-212061000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:212059600-212061200	Weak transcription	Pancreas	Pancrea
9	chr1:212059800-212061000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:212059800-212062000	Enhancers	HepG2	liver
11	chr1:212060000-212061200	Weak transcription	Fetal Intestine Small	intestine
12	chr1:212060000-212062600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr1:212060000-212068600	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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