Variant report

Variant	rs17018191
Chromosome Location	chr1:212090728-212090729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:212090529..212093204-chr1:212208450..212210624,2	K562	blood:
2	chr1:212088917..212091243-chr1:212091462..212093769,2	K562	blood:
3	chr1:212089622..212092139-chr1:212102871..212105783,2	K562	blood:
4	chr1:212085059..212088251-chr1:212089399..212094888,5	K562	blood:

Variant related genes	Relation type
ENSG00000143493	Chromatin interaction
ENSG00000143476	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10494945	1.00[AMR][1000 genomes]
rs10494946	0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1343736	0.83[AMR][1000 genomes]
rs17018161	1.00[AMR][1000 genomes]
rs17042028	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56945865	1.00[AMR][1000 genomes]
rs57554409	0.83[AMR][1000 genomes]
rs59418388	0.84[AFR][1000 genomes]
rs60083191	1.00[AMR][1000 genomes]
rs61511331	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091010	1.00[AMR][1000 genomes]
rs73091020	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091021	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091023	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091026	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73091029	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091032	0.90[AFR][1000 genomes]
rs73091035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091037	0.87[AFR][1000 genomes]
rs73091038	0.88[AFR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212082800-212093400	Weak transcription	Right Atrium	heart
2	chr1:212084200-212090800	Weak transcription	Adipose Nuclei	Adipose
3	chr1:212084800-212090800	Weak transcription	Pancreas	Pancrea
4	chr1:212084800-212113000	Weak transcription	Brain Anterior Caudate	brain
5	chr1:212085400-212101800	Weak transcription	Colonic Mucosa	Colon
6	chr1:212085800-212090800	Weak transcription	Stomach Mucosa	stomach
7	chr1:212088000-212099200	Enhancers	Fetal Intestine Large	intestine
8	chr1:212088600-212099200	Enhancers	Fetal Intestine Small	intestine
9	chr1:212089800-212093600	Enhancers	HepG2	liver
10	chr1:212089800-212093800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:212090000-212091800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr1:212090000-212093600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr1:212090200-212094600	Enhancers	Hela-S3	cervix
14	chr1:212090400-212092000	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr1:212090400-212092000	Flanking Active TSS	A549	lung
16	chr1:212090400-212094600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:212090600-212092000	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr1:212090600-212092200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:212090600-212093200	Enhancers	Liver	Liver
20	chr1:212090600-212093800	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr1:212090600-212094400	Enhancers	Osteobl	bone
22	chr1:212090600-212094600	Enhancers	Duodenum Mucosa	Duodenum
23	chr1:212090600-212094800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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