Variant report

Variant	rs10494946
Chromosome Location	chr1:212077231-212077232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10494945	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs12084756	0.85[YRI][hapmap]
rs1343736	0.83[AMR][1000 genomes]
rs17018161	1.00[AMR][1000 genomes]
rs17018191	0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17042028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56945865	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57554409	0.83[AMR][1000 genomes]
rs60083191	1.00[AMR][1000 genomes]
rs61511331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6664082	0.85[YRI][hapmap]
rs73091010	1.00[AMR][1000 genomes]
rs73091020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091026	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73091029	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73091032	0.92[AFR][1000 genomes]
rs73091035	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762218	chr1:212046447-212087682	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:212074400-212078400	Enhancers	Fetal Intestine Small	intestine
2	chr1:212074400-212078800	Enhancers	Fetal Intestine Large	intestine
3	chr1:212076200-212080000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:212076200-212080800	Weak transcription	Esophagus	oesophagus
5	chr1:212076200-212083600	Weak transcription	Pancreas	Pancrea
6	chr1:212077000-212077400	Enhancers	Adipose Nuclei	Adipose
7	chr1:212077000-212077400	Flanking Active TSS	Liver	Liver
8	chr1:212077000-212077400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
9	chr1:212077000-212077400	Enhancers	Small Intestine	intestine
10	chr1:212077000-212077600	Enhancers	Stomach Mucosa	stomach
11	chr1:212077000-212078000	Enhancers	Duodenum Mucosa	Duodenum
12	chr1:212077000-212078000	Enhancers	HepG2	liver
13	chr1:212077200-212077400	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr1:212077200-212082600	Weak transcription	Colonic Mucosa	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links